# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qeaA 161 4.805e-17 2hq7A 142 4.367e-16 b.45.1.1 136657 2re7A 133 6.436e-14 2fhqA 136 2.488e-12 b.45.1.1 133497 2i02A 141 5.120e-11 b.45.1.1 136936 2ig6A 144 5.076e-07 1rfeA 161 7.142e-07 b.45.1.1 111796 2htiA 127 1.840e-04 b.45.1.1 136744 2asfA 126 4.923e-04 b.45.1.1 127253 2hq9A 136 3.095e-03 b.45.1.1 136659 1w9aA 143 3.578e-03 b.45.1.1 114408 2fg9A 167 9.089e-02 b.45.1.1 133426 2hhzA 140 1.765e-01 2aq6A 144 3.670e-01 b.45.1.1 127156 1thfD 254 1.596e+00 1thfD c.1.2.1 28535 1ks9A 292 2.267e+00 a.100.1.7 68857 c.2.1.6 68858 1ucyE 110 2.477e+00 1ucyE 1t3vA 125 3.447e+00 c.55.5.1 112232 1afqC 97 3.903e+00 5ptp 1o06A 21 4.032e+00 j.105.1.1 86524 3cp3A 128 4.433e+00 1ln4A 99 5.798e+00 d.68.4.1 74043 2p5bA 348 6.326e+00 2yx6A 111 6.689e+00 1vh7A 251 7.556e+00 c.1.2.1 100646 2cw5A 236 7.600e+00 2qa9E 186 7.657e+00 1dnlA 200 7.974e+00 1ci0A b.45.1.1 25753 1g79A 200 8.144e+00 1ci0A b.45.1.1 25752 2hvmA 274 8.852e+00 c.1.8.5 28985 1p7tA 707 9.096e+00 c.1.13.1 94319 1jo0A 98 9.195e+00 d.68.4.1 77140 1yphE 98 1.122e+01 1zn6A 212 1.128e+01 d.303.1.1 125373 1fs1A 42 1.129e+01 1fqvA a.158.1.1 19250 2j0wA 448 1.242e+01 c.73.1.3 137923 d.58.18.10 137924 d.58.18.10 137925 2fzfA 159 1.243e+01 a.25.1.1 134437 1uhvA 501 1.340e+01 b.71.1.2 99402 c.1.8.3 99403 1w3oA 205 1.345e+01 b.45.1.1 114142 1v66A 66 1.417e+01 a.140.2.1 113543 1barA 128 1.491e+01 1bfg b.42.1.1 25504 2j9iA 422 1.515e+01 2b95A 97 1.553e+01 1vzwA 225 1.587e+01 c.1.2.1 120553 1t9mA 205 1.628e+01 b.45.1.1 112364 2ea3A 184 1.908e+01 1kqzA 274 1.945e+01 c.1.8.5 68844 2ew2A 314 2.004e+01 2q6kA 258 2.034e+01 1arb 264 2.094e+01 1arb 1a8l 227 2.371e+01 1a8l 2bshA 121 2.421e+01 1wwtA 89 2.482e+01 2fliA 218 2.496e+01 c.1.2.2 133714 2gsjA 272 2.512e+01 1qo2A 242 2.556e+01 1qo2A c.1.2.1 28533 1d8cA 710 2.588e+01 1d8cA c.1.13.1 29325 2h5cA 199 2.615e+01 b.47.1.1 136145 1pe1A 259 2.660e+01 c.1.10.4 94591 2sga 182 2.692e+01 1qq4A 2sgaA 182 2.789e+01 b.47.1.1 25808 2b9lA 373 2.842e+01 1m7jA 475 2.927e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1ofzA 313 3.056e+01 b.68.8.1 86978 1lbu 214 3.128e+01 1lbu 2uy2A 288 3.194e+01 1byrA 153 3.279e+01 1byrA d.136.1.1 41450 1uc7A 125 3.299e+01 c.47.1.1 99163 1uj2A 214 3.310e+01 c.37.1.6 99452 2oznA 134 3.322e+01 2a8yA 264 3.370e+01 1tqjA 218 3.552e+01 c.1.2.2 107228 3ygsP 98 3.652e+01 3ygsP a.77.1.3 18435 2p1gA 230 3.675e+01 1lroA 260 3.688e+01 c.1.10.4 78161 3c4sA 58 3.754e+01 1z8gA 367 3.832e+01 b.47.1.2 124697 d.170.1.2 124698 2vl7A 460 3.837e+01 1pbvA 196 3.884e+01 a.118.3.1 19179 2rdgA 193 3.913e+01 1ycoA 277 3.995e+01