# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i02A 148 1.91e-21 b.45.1.1 136936 2fhqA 141 6.74e-20 b.45.1.1 133497 2qeaA 160 2.47e-19 2re7A 134 1.21e-18 2hq7A 146 2.85e-17 b.45.1.1 136657 1rfeA 162 1.45e-08 b.45.1.1 111796 2asfA 137 1.47e-07 b.45.1.1 127253 2ig6A 150 1.84e-07 1t9mA 214 6.18e-07 b.45.1.1 112364 2hhzA 150 1.26e-06 1dnlA 199 1.28e-06 1ci0A b.45.1.1 25753 1g79A 218 1.95e-06 1ci0A b.45.1.1 25752 2i51A 195 2.35e-06 2htiA 185 1.34e-05 b.45.1.1 136744 2htdA 140 1.69e-05 1nrgA 261 2.19e-05 b.45.1.1 80694 1ci0A 228 2.46e-05 1ci0A b.45.1.1 25750 1ty9A 222 3.66e-05 b.45.1.1 112827 2aq6A 147 7.70e-05 b.45.1.1 127156 2ou5A 175 1.23e-04 1w9aA 147 3.12e-04 b.45.1.1 114408 1vl7A 157 5.89e-04 b.45.1.1 108732 2fg9A 178 6.42e-04 b.45.1.1 133426 2a2jA 246 1.68e-03 b.45.1.1 126033 2iabA 155 2.14e-03 1axj 122 2.41e-03 1axj 2furA 209 3.81e-03 b.45.1.1 134185 2q9kA 151 4.85e-03 2hq9A 149 1.47e-02 b.45.1.1 136659 3cp3A 148 2.31e-02 2ol5A 202 2.55e-02 1flmA 122 2.63e-02 1axj b.45.1.1 25747 2arzA 247 2.12e-01 b.45.1.1 127225 1ejeA 192 2.56e-01 1ejeA b.45.1.2 25757 1xhnA 184 3.53e-01 b.45.1.1 122007 2hqvA 195 9.12e-01 e.62.1.2 136674 3dczA 207 2.25e+00 3b5mA 205 4.59e+00 3c9qA 205 4.76e+00 2d5rA 252 4.79e+00 1cauB 184 5.79e+00 1caxB b.82.1.2 28103 1j27A 102 6.37e+00 d.58.50.1 90778 1k8kD 300 7.15e+00 d.198.2.1 68309 d.198.2.1 68310 1e8oB 106 8.37e+00 1914 d.49.1.1 38775 2nr3A 183 8.86e+00 1xfkA 336 9.27e+00 c.42.1.1 115264 1vixA 420 9.54e+00 c.56.5.4 100777 d.58.19.1 100778 1hh1A 143 1.12e+01 1gefA c.52.1.18 61036 1sh7A 284 1.15e+01 1caxB 184 1.16e+01 1caxB b.82.1.2 28105 3bz6A 183 1.17e+01 2avwA 311 1.22e+01 1fnoA 417 1.23e+01 c.56.5.4 75841 d.58.19.1 70145 3ba3A 145 1.23e+01 2axqA 467 1.27e+01 2nttA 217 1.27e+01 1y08A 323 1.28e+01 d.3.1.12 116280 2dcnA 311 1.35e+01 c.72.1.1 131374 3rubS 123 1.41e+01 1rboC d.73.1.1 39616 1ufwA 95 1.66e+01 d.58.7.1 99358 2qm1A 326 1.72e+01 2ozpA 345 1.74e+01 2qybA 181 1.80e+01 1nnt 328 1.83e+01 1nnt 1t9bA 677 1.86e+01 c.31.1.3 112334 c.36.1.5 112335 c.36.1.9 112336 1xv5A 401 2.04e+01 1vpvA 300 2.06e+01 c.119.1.1 113975 1tfaA 329 2.18e+01 1nnt c.94.1.2 35880 1gk8I 140 2.21e+01 d.73.1.1 65242 1wstA 417 2.23e+01 c.67.1.1 121244 2vfjA 366 2.23e+01 1v6tA 255 2.24e+01 c.6.2.5 113550 2re3A 194 2.29e+01 2yvyA 278 2.37e+01 2gjgA 248 2.47e+01 2fauA 341 2.52e+01 1v58A 241 2.59e+01 c.47.1.9 108371 d.17.3.1 108372 1vpqA 273 2.64e+01 c.1.32.1 113974 1oa4A 222 2.78e+01 b.29.1.11 86731 1pvtA 238 3.02e+01 c.74.1.1 95189 1rocA 155 3.15e+01 b.1.22.1 97673 2bypA 214 3.16e+01 1iu8A 206 3.29e+01 c.56.4.1 71436 2pgzA 230 3.37e+01 3b8bA 292 3.38e+01 1dfoA 417 3.40e+01 1bj4A c.67.1.4 34480 1u5tA 233 3.42e+01 a.4.5.54 107684 a.4.5.54 107685 2dnrA 91 3.44e+01 1t4wA 196 3.47e+01 b.2.5.2 106427 1qa7A 217 3.54e+01 1havA b.47.1.4 26425 3daaA 277 3.56e+01 1daaA e.17.1.1 43272 2v78A 313 3.58e+01 2ph0A 174 3.72e+01 2bgiA 272 3.72e+01 1z6rA 406 3.84e+01 a.4.5.63 124557 c.55.1.10 124558 c.55.1.10 124559 3c0fB 91 3.85e+01 1ir21 140 3.86e+01 1w3oA 216 3.95e+01 b.45.1.1 114142