# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i02A 148 3.04e-22 b.45.1.1 136936 2fhqA 141 6.41e-21 b.45.1.1 133497 2qeaA 160 1.03e-20 2re7A 134 2.08e-19 2hq7A 146 3.05e-18 b.45.1.1 136657 1rfeA 162 2.78e-09 b.45.1.1 111796 2asfA 137 8.79e-09 b.45.1.1 127253 1t9mA 214 5.64e-08 b.45.1.1 112364 2ig6A 150 2.40e-07 2i51A 195 2.74e-07 1g79A 218 3.85e-07 1ci0A b.45.1.1 25752 2hhzA 150 3.86e-07 2htdA 140 5.16e-07 1dnlA 199 7.95e-07 1ci0A b.45.1.1 25753 1ci0A 228 1.76e-06 1ci0A b.45.1.1 25750 2htiA 185 1.82e-06 b.45.1.1 136744 1nrgA 261 2.04e-06 b.45.1.1 80694 1ty9A 222 3.02e-06 b.45.1.1 112827 2aq6A 147 3.14e-06 b.45.1.1 127156 1w9aA 147 7.87e-06 b.45.1.1 114408 1vl7A 157 1.20e-05 b.45.1.1 108732 2ou5A 175 2.75e-05 2fg9A 178 6.04e-05 b.45.1.1 133426 3cp3A 148 3.67e-04 2furA 209 5.60e-04 b.45.1.1 134185 1axj 122 7.51e-04 1axj 2a2jA 246 7.56e-04 b.45.1.1 126033 2iabA 155 8.86e-04 2q9kA 151 1.18e-03 2hq9A 149 2.29e-03 b.45.1.1 136659 1flmA 122 2.31e-03 1axj b.45.1.1 25747 2ol5A 202 4.69e-03 2arzA 247 2.04e-02 b.45.1.1 127225 1xhnA 184 1.48e-01 b.45.1.1 122007 1ejeA 192 1.55e-01 1ejeA b.45.1.2 25757 2hqvA 195 2.02e-01 e.62.1.2 136674 3ba3A 145 1.07e+00 1w3oA 216 1.27e+00 b.45.1.1 114142 2d16A 162 1.72e+00 2ozpA 345 1.83e+00 3b8bA 292 2.21e+00 2avwA 311 2.50e+00 1xfkA 336 3.03e+00 c.42.1.1 115264 2p51A 333 3.22e+00 1cauB 184 3.71e+00 1caxB b.82.1.2 28103 3b5mA 205 3.98e+00 3bwnA 391 4.15e+00 1rocA 155 4.42e+00 b.1.22.1 97673 2qkpA 151 4.78e+00 1m6kA 251 4.88e+00 e.3.1.1 78695 1z6rA 406 5.08e+00 a.4.5.63 124557 c.55.1.10 124558 c.55.1.10 124559 1ofuA 320 5.96e+00 c.32.1.1 86972 d.79.2.1 86973 3c9qA 205 6.05e+00 1vr4A 103 6.08e+00 d.230.5.1 120432 3bpkA 206 6.26e+00 2j5vA 367 6.50e+00 1y9wA 140 6.80e+00 d.108.1.1 122783 1y08A 323 7.41e+00 d.3.1.12 116280 2d5rA 252 7.64e+00 1wvqA 167 7.79e+00 1j27A 102 8.06e+00 d.58.50.1 90778 3dczA 207 8.34e+00 3c0fB 91 8.38e+00 2p5vA 162 8.56e+00 1t9bA 677 8.71e+00 c.31.1.3 112334 c.36.1.5 112335 c.36.1.9 112336 1caxB 184 8.81e+00 1caxB b.82.1.2 28105 1vggA 161 8.88e+00 d.256.1.1 113647 1ockA 412 9.08e+00 c.117.1.1 86802 2jsxA 95 9.14e+00 2pe3A 354 9.23e+00 1dfoA 417 9.37e+00 1bj4A c.67.1.4 34480 1d8hA 311 9.97e+00 1d8iA d.63.1.1 39544 2cwzA 141 1.00e+01 d.38.1.7 130961 1yqfA 203 1.04e+01 d.25.1.1 123880 2euaA 431 1.07e+01 d.161.1.1 132380 1nnwA 252 1.07e+01 d.159.1.5 80674 3bemA 218 1.09e+01 1o5oA 221 1.10e+01 c.61.1.1 92509 16pk 415 1.13e+01 16pk 16pkA 415 1.13e+01 c.86.1.1 35454 1mgpA 313 1.14e+01 c.119.1.1 79098 1pvtA 238 1.25e+01 c.74.1.1 95189 3bzmA 431 1.27e+01 2cxiA 348 1.32e+01 3cu5A 141 1.42e+01 1d2eA 397 1.44e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 2ftrA 108 1.46e+01 d.58.4.15 134077 2avdA 219 1.46e+01 c.66.1.1 127377 2vfjA 366 1.50e+01 2aneA 125 1.53e+01 b.122.1.10 127046 2htaA 309 1.54e+01 2q3uA 383 1.56e+01 d.126.1.6 139809 1wstA 417 1.83e+01 c.67.1.1 121244 1usyA 275 1.83e+01 d.104.1.1 113422 2gjgA 248 1.84e+01 2ouwA 138 1.91e+01 2gr8A 99 1.92e+01 d.24.1.4 135522 2qybA 181 1.92e+01 2basA 431 1.92e+01 c.1.33.1 128244 d.110.6.2 128245 1ki9A 192 1.97e+01 c.37.1.1 84404 2dcnA 311 1.97e+01 c.72.1.1 131374 1dgwX 79 1.97e+01 1caxB b.82.1.2 28091 1vkpA 383 1.98e+01 d.126.1.6 108686 2azeA 155 2.00e+01 e.63.1.1 127605 2vlgA 111 2.01e+01 2dykA 161 2.02e+01 1q32A 544 2.05e+01 d.136.1.3 104507 d.136.1.3 104508 1p4uA 153 2.18e+01 b.1.10.2 87780 2av4A 162 2.18e+01 2pviA 157 2.20e+01 3pviA c.52.1.6 33302 1viaA 175 2.20e+01 c.37.1.2 100754 2i4rA 102 2.23e+01 1ivhA 394 2.24e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1pvlA 301 2.25e+01 f.6.1.1 43819 2r6r1 338 2.25e+01 1mqeA 207 2.27e+01 d.113.1.1 91394 1f9aA 168 2.32e+01 1f9aA c.26.1.3 31602 1j9lA 247 2.34e+01 c.106.1.1 62762 2bgiA 272 2.34e+01 1vpvA 300 2.39e+01 c.119.1.1 113975 1t1jA 125 2.40e+01 c.23.14.2 106249 2ogxA 276 2.47e+01 2c6qA 351 2.53e+01 2o0qA 115 2.57e+01 d.166.1.7 138867 2gmsA 390 2.58e+01 1ne9A 335 2.59e+01 d.108.1.4 91839 d.108.1.4 91840 1pysA 350 2.59e+01 1pysA d.104.1.1 40775 1p15A 253 2.63e+01 c.45.1.2 93894 1sc6A 404 2.64e+01 c.2.1.4 118932 c.23.12.1 118933 d.58.18.1 118934 1w2iA 91 2.66e+01 d.58.10.1 109127 3ck1A 150 2.67e+01 2joqA 91 2.68e+01 2fauA 341 2.69e+01 1f2tB 148 2.72e+01 1f2tB 1hrkA 359 2.76e+01 1hrkA c.92.1.1 61228 1ni9A 338 2.84e+01 e.7.1.2 85739 1e8oB 106 2.90e+01 1914 d.49.1.1 38775 1ddlA 188 2.91e+01 1auyA b.121.4.6 23317 1epwA 1290 2.92e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1sflA 238 2.92e+01 c.1.10.1 112077 1bywA 110 2.95e+01 1bywA d.110.3.6 40912 2cavA 445 2.97e+01 1dgwA b.82.1.2 28094 b.82.1.2 28095 1ohvA 472 2.97e+01 c.67.1.4 93031 1eyuA 157 2.99e+01 3pviA c.52.1.6 33304 1g7fA 298 2.99e+01 1pty c.45.1.2 60330 1b7yA 350 3.01e+01 1pysA d.104.1.1 40776 1ej2A 181 3.05e+01 1f9aA c.26.1.3 59414 1jlnA 297 3.07e+01 1pty c.45.1.2 63172 1m8jA 181 3.09e+01 c.26.1.3 84875 2v8fA 140 3.09e+01 2p3nA 256 3.11e+01 1sfjA 238 3.17e+01 c.1.10.1 112075 1fsz 372 3.21e+01 1fsz 1lkfA 299 3.29e+01 1pvl f.6.1.1 43821 1sh7A 284 3.33e+01 1d4xA 375 3.33e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 1uxaA 194 3.35e+01 b.21.1.1 108091 1rthA 560 3.35e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 2ph0A 174 3.36e+01 3pviA 157 3.37e+01 3pviA c.52.1.6 33300 1k8kD 300 3.47e+01 d.198.2.1 68309 d.198.2.1 68310 1wv2A 265 3.58e+01 c.1.31.1 114910 2culA 232 3.67e+01 c.3.1.7 130813 1xruA 282 3.79e+01 b.82.1.13 122262 2ra6A 166 3.84e+01 1pa1A 310 3.86e+01 c.45.1.2 94404 1rzhH 260 3.87e+01 b.41.1.1 98162 f.23.10.1 98163 1aijH 260 3.90e+01 6prcH b.41.1.1 25466 f.23.10.1 43463 3bh0A 315 3.90e+01 2cm2A 304 3.91e+01 c.45.1.2 130610