# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i02A 148 1.50e-21 b.45.1.1 136936 2fhqA 141 3.56e-20 b.45.1.1 133497 2qeaA 160 1.10e-18 2re7A 134 2.13e-18 2hq7A 146 9.59e-17 b.45.1.1 136657 1rfeA 162 3.64e-08 b.45.1.1 111796 2ig6A 150 1.92e-07 2asfA 137 2.97e-07 b.45.1.1 127253 1t9mA 214 3.88e-07 b.45.1.1 112364 2hhzA 150 1.05e-06 1g79A 218 1.52e-06 1ci0A b.45.1.1 25752 1dnlA 199 1.84e-06 1ci0A b.45.1.1 25753 2i51A 195 2.11e-06 2aq6A 147 7.63e-06 b.45.1.1 127156 1nrgA 261 1.04e-05 b.45.1.1 80694 1w9aA 147 1.93e-05 b.45.1.1 114408 1ty9A 222 3.22e-05 b.45.1.1 112827 2htdA 140 4.30e-05 2ou5A 175 6.54e-05 2htiA 185 7.26e-05 b.45.1.1 136744 1ci0A 228 1.48e-04 1ci0A b.45.1.1 25750 1vl7A 157 2.47e-04 b.45.1.1 108732 2fg9A 178 3.75e-04 b.45.1.1 133426 2iabA 155 1.83e-03 2a2jA 246 2.29e-03 b.45.1.1 126033 2furA 209 3.44e-03 b.45.1.1 134185 1axj 122 3.74e-03 1axj 2q9kA 151 4.29e-03 1flmA 122 6.66e-03 1axj b.45.1.1 25747 3cp3A 148 9.06e-03 2hq9A 149 3.02e-02 b.45.1.1 136659 2arzA 247 6.30e-02 b.45.1.1 127225 2ol5A 202 6.55e-02 1xhnA 184 2.23e-01 b.45.1.1 122007 1ejeA 192 2.77e-01 1ejeA b.45.1.2 25757 2ozpA 345 1.56e+00 3ba3A 145 1.83e+00 2hqvA 195 2.18e+00 e.62.1.2 136674 3bemA 218 2.62e+00 2p51A 333 3.06e+00 3b8bA 292 3.18e+00 1xfkA 336 3.66e+00 c.42.1.1 115264 2d16A 162 4.26e+00 2vfjA 366 4.44e+00 3b5mA 205 4.58e+00 1j27A 102 4.77e+00 d.58.50.1 90778 3bwnA 391 5.77e+00 1cauB 184 6.41e+00 1caxB b.82.1.2 28103 3c0fB 91 7.24e+00 2nttA 217 7.56e+00 2avwA 311 7.93e+00 1ofuA 320 9.48e+00 c.32.1.1 86972 d.79.2.1 86973 3c9qA 205 9.91e+00 2qkpA 151 1.02e+01 1jenA 267 1.02e+01 1jenA 1z6rA 406 1.04e+01 a.4.5.63 124557 c.55.1.10 124558 c.55.1.10 124559 2bgiA 272 1.07e+01 2d5rA 252 1.17e+01 1ki9A 192 1.24e+01 c.37.1.1 84404 1nnt 328 1.25e+01 1nnt 1y08A 323 1.31e+01 d.3.1.12 116280 1ockA 412 1.35e+01 c.117.1.1 86802 1wvqA 167 1.41e+01 2j5vA 367 1.41e+01 1vggA 161 1.43e+01 d.256.1.1 113647 1p91A 269 1.43e+01 c.66.1.33 94378 2dcnA 311 1.46e+01 c.72.1.1 131374 1vm6A 228 1.47e+01 c.2.1.3 118631 d.81.1.3 108877 3c8uA 208 1.51e+01 1caxB 184 1.54e+01 1caxB b.82.1.2 28105 1rocA 155 1.59e+01 b.1.22.1 97673 1w2xA 758 1.67e+01 c.14.1.4 109134 c.14.1.4 109135 1a0gA 282 1.73e+01 1daaA e.17.1.1 43276 3dczA 207 1.78e+01 1jl0A 334 1.84e+01 1jenA d.156.1.1 63155 2o2zA 323 1.85e+01 1t9bA 677 1.88e+01 c.31.1.3 112334 c.36.1.5 112335 c.36.1.9 112336 1tvjA 166 1.91e+01 2qybA 181 2.00e+01 1qd1A 325 2.13e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 2dpmA 284 2.15e+01 2dpmA c.66.1.28 34246 1l1nA 183 2.22e+01 b.47.1.4 73476 1vr0A 247 2.24e+01 c.148.1.1 120428 1xv5A 401 2.31e+01 2vlgA 111 2.33e+01 2basA 431 2.39e+01 c.1.33.1 128244 d.110.6.2 128245 1zxtA 76 2.39e+01 16pk 415 2.45e+01 16pk 16pkA 415 2.45e+01 c.86.1.1 35454 1wv2A 265 2.46e+01 c.1.31.1 114910 2cxiA 348 2.47e+01 2ganA 190 2.47e+01 d.108.1.1 134889 2dt8A 280 2.47e+01 1nrkA 328 2.53e+01 b.44.2.1 92089 d.250.1.1 92090 2i4rA 102 2.53e+01 1c7sA 858 2.60e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 2qtdA 105 2.67e+01 2ag5A 246 2.69e+01 c.2.1.2 126719 2r6r1 338 2.74e+01 2gmsA 390 2.75e+01 2hzbA 333 2.79e+01 c.143.1.1 136911 2avdA 219 2.80e+01 c.66.1.1 127377 1ecfA 504 2.87e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1pvtA 238 2.92e+01 c.74.1.1 95189 2gr8A 99 2.96e+01 d.24.1.4 135522 1ir21 140 2.99e+01 2azeA 155 3.03e+01 e.63.1.1 127605 1ecfB 504 3.04e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 2euaA 431 3.04e+01 d.161.1.1 132380 1fsz 372 3.06e+01 1fsz 1vr4A 103 3.07e+01 d.230.5.1 120432 2ph0A 174 3.10e+01 2dnrA 91 3.12e+01 1uarA 285 3.16e+01 c.46.1.2 107762 c.46.1.2 107763 1o5oA 221 3.17e+01 c.61.1.1 92509 1cydA 244 3.18e+01 1cydA c.2.1.2 29825 1qba 858 3.18e+01 1qba 1gk8I 140 3.27e+01 d.73.1.1 65242 2onsA 314 3.28e+01 2yv1A 294 3.31e+01 1j9lA 247 3.31e+01 c.106.1.1 62762 1rthA 560 3.32e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1t4wA 196 3.36e+01 b.2.5.2 106427 1iu8A 206 3.41e+01 c.56.4.1 71436 1q32A 544 3.44e+01 d.136.1.3 104507 d.136.1.3 104508 1ye8A 178 3.47e+01 c.37.1.11 123010 3daaA 277 3.55e+01 1daaA e.17.1.1 43272 2hrcA 359 3.58e+01 c.92.1.1 136687 2gjgA 248 3.61e+01 1hrkA 359 3.69e+01 1hrkA c.92.1.1 61228 1zvkA 358 3.70e+01 2fgtA 417 3.77e+01 2v78A 313 3.80e+01 1fggA 261 3.81e+01 1fggA c.68.1.7 34576 1dgwX 79 3.94e+01 1caxB b.82.1.2 28091 2d1cA 496 3.99e+01