# List of top-scoring protein chains for T0496.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bd3A	112	16.30		
1iyxA	432	20.42	c.1.11.1,d.54.1.1	83815,83816
1a3rL	220	26.68	b.1.1.1,b.1.1.2	19780,20890
1a5fL	220	27.27	b.1.1.1,b.1.1.2	20302,21294
2gkiA	291	29.15		
2i9lA	219	29.35		
2c1pA	218	31.08		
1ncbL	214	31.17	b.1.1.1,b.1.1.2	19980,21036
2c1oA	254	33.38		
43c9A	113	35.79	b.1.1.1	20386
1e9fA	217	36.69	c.37.1.1	64811
1h3pL	240	37.93	b.1.1.1,b.1.1.2	76650,76651
1mhhA	220	41.58	b.1.1.1,b.1.1.2	79119,79120
1nlbL	220	41.58	b.1.1.1,b.1.1.2	80623,80624
2dtgB	219	41.79		
1ap2A	113	45.76	b.1.1.1	20182
1mvuA	114	45.81	b.1.1.1	91474
2ap2A	115	46.99	b.1.1.1	20178
1t4kA	217	49.76	b.1.1.1,b.1.1.2	112235,112236
1q9rA	219	51.03	b.1.1.1,b.1.1.2	96305,96306
2g5bA	217	51.67		
1bfoA	214	54.52	b.1.1.1,b.1.1.2	20310,21302
1nn5A	215	57.76	c.37.1.1	85892
1nmyA	209	57.83	c.37.1.1	85883
2immA	114	59.19	b.1.1.1	19857
2ck0L	216	59.46	b.1.1.1,b.1.1.2	100855,100856
2imnA	113	59.76	b.1.1.1	19856
2bx5A	107	60.05		
1jfqL	215	60.57	b.1.1.1,b.1.1.2	66648,66649
6fabL	214	60.58	b.1.1.1,b.1.1.2	19908,21002
1e98A	215	61.02	c.37.1.1	64804
1tqbC	219	67.89	b.1.1.1,b.1.1.2	107215,107216
1i3gL	111	71.80	b.1.1.1	66019
1ifhL	218	71.93	b.1.1.1,b.1.1.2	19790,20900
1hilA	217	71.94	b.1.1.1,b.1.1.2	19786,20896
2ajuL	216	75.00		
1o4zA	346	77.84	b.29.1.2	92474
1fgvL	109	78.93	b.1.1.1	19852
1gp8A	40	79.58	j.58.1.1	46342
2uziL	104	83.44		
1ztxL	212	88.38