# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gp8A	40	5.723	j.58.1.1	46343
2vduB	450	11.98		
1etxA	98	25.04	a.4.1.12	18978
1wn0A	145	28.86	a.24.10.2	121070
2uv3A	126	33.09		
2a0bA	125	36.78	a.24.10.1	16630
1fuiA	591	41.45	b.43.2.1,c.85.1.1	25674,35444
2gd5A	179	41.97		
3c10A	423	46.90		
1umuA	116	47.90	b.87.1.1	28382
2pqpA	421	51.48		
1npmA	225	54.80	b.47.1.2	26070
1liiA	363	54.92	c.72.1.1	73921
2nvrA	423	55.66		
2ouaA	188	58.98		
2p6pA	384	63.45		
1gp8A	40	67.17	j.58.1.1	46342
2ch9A	131	68.97		
2ptzA	432	72.66		
2ea3A	189	75.76		
1oktA	211	77.36	a.45.1.1,c.47.1.5	93272,93273
1qxrA	189	77.76	b.82.1.7	96552
2htiA	185	78.48	b.45.1.1	136744
1avqA	228	79.27	c.52.1.13	33326
1qtyT	101	79.28	b.1.1.4	21769
2b8mA	117	85.33	b.82.1.18	128092
1jthA	82	87.02	h.1.15.1	67270