# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gp8A	40	3.845	j.58.1.1	46343
2yz1A	120	8.801		
2bmzA	141	9.689		
1vcoA	550	15.07	c.23.16.1,c.37.1.10	108508,108509
1etxA	98	17.24	a.4.1.12	18978
1npmA	225	18.60	b.47.1.2	26070
2a0bA	125	18.80	a.24.10.1	16630
1wn0A	145	20.92	a.24.10.2	121070
2vduB	450	21.12		
2p6pA	384	21.61		
2dj0A	137	25.42		
1geqA	248	26.05	c.1.2.4	28589
1fuiA	591	28.25	b.43.2.1,c.85.1.1	25674,35444
4ubpC	570	28.34	b.92.1.1,c.1.9.2	28431,29053
1k38A	254	28.35	e.3.1.1	84303
1ie7C	570	30.72	b.92.1.1,c.1.9.2	62315,62316
2hft	218	39.17		
2gd5A	179	39.94		
2ovsA	118	40.97		
3bqoA	211	42.40		
2ea3A	189	42.81		
1oktA	211	45.37	a.45.1.1,c.47.1.5	93272,93273
2z4tA	514	45.98		
1qtyT	101	50.80	b.1.1.4	21769
2ptzA	432	50.80		
2uv3A	126	52.33		
2bdgA	223	55.85		
1s5lO	246	56.87		
2htiA	185	57.57	b.45.1.1	136744
1ujpA	271	59.77	c.1.2.4	99462
1avqA	228	60.09	c.52.1.13	33326
2ouaA	188	60.87		
3b9pA	297	62.36		
1uouA	474	62.44	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1e32A	458	63.27	b.52.2.3,c.37.1.20,d.31.1.1	59183,59184,59185
1jthA	82	63.58	h.1.15.1	67270
2d4wA	504	64.09		
3fib	249	66.39		
1br2A	791	66.42	b.34.3.1,c.37.1.9	24558,32155
2akzA	439	66.56	c.1.11.1,d.54.1.1	126944,126945
2f9nA	245	68.04		
1neuA	124	70.50	b.1.1.1	19704
1zbdB	134	70.65	g.50.1.1	45359
1azzA	226	72.86	b.47.1.2	26072
1s2wA	295	73.72	c.1.12.7	98407
1t8oA	245	75.06	b.47.1.2	119187
1kczA	413	76.51	c.1.11.2,d.54.1.1	68451,68452
1rmwA	212	77.52		
1ejxC	567	79.06	b.92.1.1,c.1.9.2	83184,83185
1yviA	149	79.35	a.24.10.2	124099
1koe	172	79.67		
2fibA	269	79.89	d.171.1.1	42457
1kfcA	268	80.14	c.1.2.4	77371
2g0wA	296	80.41	c.1.15.4	134503
1a1uA	35	84.94	a.53.1.1	17863
2chcA	170	87.69		
1qxrA	189	87.87	b.82.1.7	96552
1x0tA	120	88.85		
1yzyA	413	89.59	c.146.1.1	124292