# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gp8A	40	3.325	j.58.1.1	46343
1wn0A	145	4.396	a.24.10.2	121070
1qqeA	292	23.40	a.118.8.1	19210
2a0bA	125	24.76	a.24.10.1	16630
1geqA	248	27.60	c.1.2.4	28589
1puoA	170	34.82	a.101.1.1,a.101.1.1	95134,95135
2ouaA	188	38.67		
1rxwA	336	41.86	a.60.7.1,c.120.1.2	98059,98060
2a0b	125	48.70		
1etxA	98	49.23	a.4.1.12	18978
2q4fA	149	50.84	a.24.10.2	139847
1oktA	211	57.28	a.45.1.1,c.47.1.5	93272,93273
3bqoA	211	58.54		
2af6A	258	61.25		
1pd21	199	61.60		
1bykA	255	62.05	c.93.1.1	35706
2ejnA	153	62.80	a.101.1.1,a.101.1.1	132279,132280
2p61A	162	63.20		
1fo3A	460	63.36	a.102.2.1	18845
1fuiA	591	63.75	b.43.2.1,c.85.1.1	25674,35444
1j6wA	175	70.96	d.185.1.2	62663
1gseA	221	71.43	a.45.1.1,c.47.1.5	17667,32961
2fibA	269	73.13	d.171.1.1	42457
1yviA	149	75.53	a.24.10.2	124099
1koe	172	76.01		
3fib	249	78.61		
2qupA	145	81.93		
2chcA	170	82.13		
1ujpA	271	84.37	c.1.2.4	99462
1f3aA	222	84.47	a.45.1.1,c.47.1.5	17701,32995
2cavA	445	85.81	b.82.1.2,b.82.1.2	28094,28095
1sfcD	87	87.50	h.1.15.1	45646