# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1dpoA 223 1.463 b.47.1.2 25975 1mrgA 263 3.044 d.165.1.1 42183 1h9hE 223 4.438 b.47.1.2 103810 1sfcD 87 7.798 h.1.15.1 45646 1npmA 225 7.980 b.47.1.2 26070 2pgbB 259 8.718 1lv7A 257 9.458 c.37.1.20 78232 1orrA 347 9.499 c.2.1.2 93460 2p3uB 233 10.21 1t8oA 245 10.33 b.47.1.2 119187 2q4fA 149 10.46 a.24.10.2 139847 1ozhA 566 10.81 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1xdwA 331 11.78 2vduB 450 12.15 1o26A 232 13.03 d.207.1.1 86566 2gakA 391 13.74 1p32A 209 13.99 d.25.1.1 38379 2a0bA 125 14.44 a.24.10.1 16630 1wn0A 145 15.45 a.24.10.2 121070 2h0rA 216 16.55 2e9xC 219 17.82 1cjaA 342 17.99 d.144.1.3 41708 2f91A 237 20.11 b.47.1.2 133150 1qwnA 1045 20.12 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2uv3A 126 21.54 2bz6H 254 22.26 b.47.1.2 129552 2nn6B 249 23.36 2ouaA 188 23.51 2g0wA 296 23.73 c.1.15.4 134503 2jo6A 113 24.88 2o8tA 253 25.09 1ile 821 25.56 2gd5A 179 25.71 2yz1A 120 26.84 2bvrH 252 27.74 1wdcC 156 28.31 a.39.1.5 17317 1bykA 255 28.77 c.93.1.1 35706 2z9iA 324 30.85 3cncA 220 31.49 1m2xA 223 31.60 d.157.1.1 84764 2gkgA 127 31.61 1kf6A 602 31.63 a.7.3.1,c.3.1.4,d.168.1.1 72394,72395,72396 1ks8A 433 33.11 a.102.1.2 77519 1vkmA 297 33.79 c.138.1.1 108670 1uurA 473 34.44 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 2ds3A 761 34.85 1liiA 363 36.25 c.72.1.1 73921 2a0b 125 39.23 1hplA 449 44.21 b.12.1.2,c.69.1.19 23639,34787 1mqoA 227 44.36 d.157.1.1 103846 2r0lA 248 45.06 1ak0 270 46.29 2qzbA 166 46.78 1jiwI 106 47.31 b.61.2.1 63078 2gp8A 40 47.75 j.58.1.1 46343 2gdrA 202 48.40 1pd21 199 49.52 2p4hX 322 49.93 1oktA 211 51.62 a.45.1.1,c.47.1.5 93272,93273 2inuA 410 52.32 1cczA 171 52.75 b.1.1.1,b.1.1.3 19758,21683 1souA 194 52.98 c.124.1.6 105858 1nnfA 309 53.52 c.94.1.1 85903 2yzsA 315 54.74 2uvoA 171 55.32 3ceiA 213 55.64 1cl8A 276 56.59 c.52.1.1 33230 1op0A 234 57.76 b.47.1.2 104019 1yviA 149 58.42 a.24.10.2 124099 1znbA 232 59.64 d.157.1.1 42039 2hkjA 469 60.02 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2ga8A 359 60.79 2aiqA 231 61.32 1vflA 356 61.96 c.1.9.1 120041 2pqpA 421 62.08 2e5vA 472 62.32 1bu8A 452 62.39 b.12.1.2,c.69.1.19 23647,34795 1gwcA 230 63.89 a.45.1.1,c.47.1.5 70660,70661 1yphC 131 65.10 1j08A 226 67.51 c.47.1.2,c.47.1.2 83855,83856 2gzbA 166 67.83 2af6A 258 68.08 1snlA 103 68.80 a.39.1.7 105820 1csh 435 69.22 3bqoA 211 69.57 1a0cA 438 70.07 c.1.15.3 29529 2ha8A 184 70.79 1dloA 556 71.46 c.55.3.1,e.8.1.2 33584,43040 1a4eA 488 71.70 e.5.1.1 42806 2i5vO 251 72.62 1qxrA 189 72.86 b.82.1.7 96552 1nedA 183 74.39 d.153.1.4 41974 1p9bA 442 77.44 c.37.1.10 94385 2v3uA 265 77.88 2g8cO 251 78.32 1ak0A 270 79.18 a.124.1.2 19345 2fjcA 156 79.67 a.25.1.1 133559 1vpwA 340 80.97 a.35.1.5,c.93.1.1 17087,35680 1a36A 592 81.62 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 2z8gA 549 81.87 2c2uA 207 82.08 1extA 162 82.55 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1gweA 503 85.11 e.5.1.1 70667 1kqfB 294 89.29 d.58.1.5,f.23.22.1 75900,75901 2i5nH 258 89.91 b.41.1.1,f.23.10.1 137064,137065