# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uv3A	126	7.985		
2gp8A	40	8.795	j.58.1.1	46343
1etxA	98	12.90	a.4.1.12	18978
1wn0A	145	17.69	a.24.10.2	121070
2vduB	450	26.24		
3c10A	423	26.58		
1fuiA	591	27.53	b.43.2.1,c.85.1.1	25674,35444
2a0bA	125	30.47	a.24.10.1	16630
2pqpA	421	33.21		
2p6pA	384	36.70		
1oktA	211	36.84	a.45.1.1,c.47.1.5	93272,93273
1umuA	116	39.65	b.87.1.1	28382
2nvrA	423	40.29		
2yz1A	120	58.90		
1liiA	363	59.85	c.72.1.1	73921
1qtyT	101	68.99	b.1.1.4	21769
1sfcD	87	69.51	h.1.15.1	45646
2bmzA	141	71.35		
2ouaA	188	72.53		
1a1uA	35	79.67	a.53.1.1	17863
2ptzA	432	83.51		
1jthA	82	84.42	h.1.15.1	67270
2hq9A	149	84.74	b.45.1.1	136659
2akzA	439	85.77	c.1.11.1,d.54.1.1	126944,126945
1npmA	225	88.77	b.47.1.2	26070
1avqA	228	89.88	c.52.1.13	33326