# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uv3A	126	3.324		
2gp8A	40	4.820	j.58.1.1	46343
1wn0A	145	9.122	a.24.10.2	121070
2a0bA	125	11.81	a.24.10.1	16630
1oktA	211	17.21	a.45.1.1,c.47.1.5	93272,93273
1geqA	248	21.59	c.1.2.4	28589
2v79A	135	22.51		
2nw2A	200	24.81		
2rffA	111	38.36		
1wy0A	342	38.46		
1l8nA	679	39.58	c.1.8.10,d.92.2.2	84564,84565
2akaB	299	40.63	c.37.1.8	126914
2a0b	125	44.03		
1gp8A	40	52.30	j.58.1.1	46342
1umuA	116	53.76	b.87.1.1	28382
1etxA	98	59.83	a.4.1.12	18978
1qqeA	292	62.27	a.118.8.1	19210
2ouaA	188	62.56		
1sfcD	87	66.17	h.1.15.1	45646
1yviA	149	66.68	a.24.10.2	124099
2ejnA	153	71.12	a.101.1.1,a.101.1.1	132279,132280
1neuA	124	72.14	b.1.1.1	19704
1a7oL	106	76.08	b.1.1.1	19942
1puoA	170	76.10	a.101.1.1,a.101.1.1	95134,95135
1a7pL	107	79.22	b.1.1.1	19950
1a4kA	217	81.00	b.1.1.1,b.1.1.2	20236,21248
1f3rB	257	85.17	b.1.1.1,b.1.1.1	20416,20417
2cavA	445	88.04	b.82.1.2,b.82.1.2	28094,28095
1axtL	216	88.60	b.1.1.1,b.1.1.2	20304,21296