# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg3A	208	1.665		
1nksA	194	2.672	c.37.1.1	31886
1o5kA	306	3.051	c.1.10.1	92504
1ki9A	192	4.249	c.37.1.1	84404
2pth	193	5.386		
2pthA	193	6.771	c.56.3.1	33793
1fdyA	297	8.158	c.1.10.1	29071
2v9dA	343	8.805		
2f7tA	227	13.61		
1hl2A	297	13.82	c.1.10.1	83581
1khtA	192	14.94	c.37.1.1	84401
1j1iA	296	16.60	c.69.1.10	83977
1tljA	213	17.98	d.282.1.1	107126
1f74A	293	18.31	c.1.10.1	29079
2f4qA	346	21.39		
1kjnA	157	21.76	c.115.1.1	72614
2drvA	200	25.01		
1vl7A	157	29.27	b.45.1.1	108732
1unlD	208	29.90	a.74.1.1	113326
1eexB	224	30.98	c.51.3.1	33213
1bob	320	31.57		
3d0cA	314	33.65		
1bobA	320	35.59	d.108.1.1	40816
1xkyA	301	35.80	c.1.10.1	122094
2geyA	158	36.56		
1nal3	297	36.71		
1ak2A	233	36.76	c.37.1.1,g.41.2.1	31894,45195
2r6aC	143	39.19		
1l1eA	287	40.27	c.66.1.18	73454
1nal1	297	42.10		
1lkxA	697	42.33	c.37.1.9	73981
2vc6A	292	44.51		
2ngrB	234	44.99	a.116.1.1	19105
2c3zA	222	45.24		
2it2A	200	50.72		
1sauA	115	50.91		
1r8sE	203	51.21	a.118.3.1	97248
1byi	224	52.05		
1yprA	125	53.16	d.110.1.1	40888
2ehhA	294	53.24		
1qhlA	227	55.17	c.37.1.12	32382
1in0A	163	55.24	d.58.49.1,d.58.49.1	83694,83695
1vykA	149	55.32		
1oapA	109	55.38	d.79.7.1	92706
1uk8A	282	55.48	c.69.1.10	107907
2r2iA	198	55.68		
2egzA	219	56.24		
1svsA	353	56.25	c.37.1.8	106051
1hjxA	362	56.60	c.1.8.5,d.26.3.1	83512,83513
2grrB	170	57.74		
1tw9A	206	57.90	a.45.1.1,c.47.1.5	107381,107382
1s4qA	228	59.72	c.37.1.1	98507
2qorA	204	59.78		
1eyhA	144	60.01	a.118.9.1	19214
1p5dX	463	60.18	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
1qr6A	584	62.86	c.2.1.7,c.58.1.3	30293,33941
2audA	257	64.99		
1qc5A	192	65.48	c.62.1.1	34147
1k68A	140	65.84	c.23.1.1	90943
1qciA	262	67.10	d.165.1.1	42201
1acfA	125	67.22	d.110.1.1	40882
2va8A	715	67.64		
3cbuA	214	67.78		
2fa5A	162	68.32		
1xgwA	176	70.52		
1snyA	267	71.21	c.2.1.2	105833
1fwkA	296	71.69	d.14.1.5,d.58.26.1	37576,39398
1byiA	224	71.90	c.37.1.10	32199
1wf3A	301	71.96	c.37.1.8,d.52.3.1	114574,114575
1lq9A	112	72.09	d.58.4.3	78129
2o8nA	265	72.11		
2rdxA	379	76.93		
1lv7A	257	76.94	c.37.1.20	78232
1g79A	218	77.01	b.45.1.1	25752
2pbrA	195	77.43		
1vhnA	318	77.64	c.1.4.1	100693
1z6gA	218	77.69		
1ydnA	295	78.07		
2pwyA	258	78.55		
2ho1A	252	79.16		
2pi6A	361	81.57		
1noyA	388	83.00	c.55.3.5	33713
1k66A	149	83.98	c.23.1.1	90941
2o3bB	136	84.74	d.221.1.1	138902
1aoxA	203	84.84	c.62.1.1	34151
1i3cA	149	85.01	c.23.1.1	71112
2rexB	197	86.44		
2bwjA	199	86.98