# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1auk	489	6.386		
1ei6A	406	10.34	c.76.1.4	90443
2f9iB	285	10.44		
1sb8A	352	16.27	c.2.1.2	105410
1cozA	129	17.06	c.26.1.2	31598
2z1uA	343	27.70		
2gsoA	393	30.91		
1p0zA	131	31.20	d.110.6.1	93882
1t8oA	245	36.06	b.47.1.2	119187
3bqoA	211	36.40		
3bu8A	235	38.38		
2i9cA	123	39.07		
1q2hA	69	41.70	a.34.4.1	104498
1fsuA	492	42.03	c.76.1.2	35032
1gp8A	40	45.09	j.58.1.1	46342
1h6oA	204	47.34	a.146.1.1	60689
1p49A	562	55.56	c.76.1.2	94089
2vccA	891	57.17		
1a7sA	225	57.24	b.47.1.2	26284
2hh8A	149	57.66		
2i2wA	212	61.10		
1g4yB	101	63.75	f.15.1.1	60251
2z1eA	342	72.91		
1yzyA	413	74.39	c.146.1.1	124292
2pvqA	201	76.95		
2i09A	403	80.61	c.76.1.5,d.327.1.1	136946,136947
1oneA	436	82.87	c.1.11.1,d.54.1.1	29200,38844
1yg2A	179	85.04	a.4.5.61	116681
2b69A	343	85.44	c.2.1.2	127974
2vugA	389	85.57		
2ovkC	159	87.37		
1a1uA	35	87.93	a.53.1.1	17863