# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	11.29		
1auk	489	20.77		
1gp8A	40	27.90	j.58.1.1	46342
1sb8A	352	29.39	c.2.1.2	105410
1ei6A	406	29.44	c.76.1.4	90443
1p0zA	131	33.48	d.110.6.1	93882
2z1uA	343	40.27		
1cozA	129	43.12	c.26.1.2	31598
2i9cA	123	50.36		
3bu8A	235	51.05		
3bqoA	211	51.51		
2cujA	108	53.82	a.4.1.18	130812
2ovkC	159	55.36		
1zsqA	528	56.14	b.55.1.8,c.45.1.3	125616,125617
1q2hA	69	56.47	a.34.4.1	104498
1h6oA	204	64.32	a.146.1.1	60689
1a7sA	225	64.93	b.47.1.2	26284
2i2wA	212	65.51		
1w6tA	444	65.99	c.1.11.1,d.54.1.1	120670,120671
2gu9A	113	67.80		
1dnlA	199	72.11	b.45.1.1	25753
2f7tA	227	77.72		
1t8oA	245	80.06	b.47.1.2	119187
2gsoA	393	83.68		
1ryp2	233	83.69		
2v0xA	235	84.53		
2vccA	891	85.42		
2ptzA	432	85.48