# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	6.417	c.26.1.2	31598
1sb8A	352	7.743	c.2.1.2	105410
1ei6A	406	10.82	c.76.1.4	90443
1p0zA	131	12.02	d.110.6.1	93882
1fsuA	492	12.35	c.76.1.2	35032
1t8oA	245	12.48	b.47.1.2	119187
2qzuA	491	13.14		
1auk	489	13.94		
1a7sA	225	15.39	b.47.1.2	26284
1yzyA	413	15.65	c.146.1.1	124292
2gsoA	393	16.33		
2f9iB	285	16.40		
3bqoA	211	17.10		
2pvqA	201	17.48		
2f7tA	227	17.73		
2ekcA	262	22.97		
2i9cA	123	24.28		
2vccA	891	30.12		
2d4wA	504	31.87		
1bmtA	246	35.73	a.46.1.1,c.23.6.1	17757,31235
1h6oA	204	36.34	a.146.1.1	60689
1kjnA	157	36.77	c.115.1.1	72614
1nhyA	219	37.06	a.45.1.1,c.47.1.5	80520,80521
2ra3A	224	37.51		
2i5vO	251	37.55		
3bu8A	235	37.76		
2g8cO	251	37.79		
1gp8A	40	38.29	j.58.1.1	46342
1yqeA	282	38.80	c.56.7.1	123879
2iucA	375	38.91		
3cewA	125	39.13		
2a31A	223	39.27	b.47.1.2	126068
2i2wA	212	40.44		
1yr2A	741	40.91		
2i09A	403	42.69	c.76.1.5,d.327.1.1	136946,136947
2vugA	389	44.62		
1tjlA	151	45.88	a.2.14.1,g.39.1.13	107027,107028
1bu6O	501	45.93	c.55.1.4,c.55.1.4	33499,33500
2furA	209	46.09	b.45.1.1	134185
1uf3A	228	46.53	d.159.1.6	99317
2f2hA	773	49.86	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1eemA	241	50.21	a.45.1.1,c.47.1.5	17717,33011
2z1uA	343	51.51		
2b7oA	464	55.19	c.1.10.8	128047
2ntoA	201	55.26		
1zsqA	528	55.69	b.55.1.8,c.45.1.3	125616,125617
1yg2A	179	55.86	a.4.5.61	116681
1q2hA	69	58.63	a.34.4.1	104498
1yy7A	213	59.07		
1hlb	158	60.84		
1ed8A	449	61.49	c.76.1.1	34988
1qwzA	235	61.81	b.100.1.1	96510
2hkjA	469	61.89	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
1surA	215	62.54	c.26.2.2	31620
2gqpA	236	63.90	d.122.1.1	135513
1iauA	227	65.39	b.47.1.2	62124
1hxnA	219	67.05	b.66.1.1	27529
1wqaA	455	67.53		
2uurA	245	68.92		
1j27A	102	69.48	d.58.50.1	90778
1p4pA	145	71.08	b.76.1.1	94112
2p3uB	233	71.35		
3bfmA	235	73.01		
1gy8A	397	76.02	c.2.1.2	83376
2rfrA	155	78.08		
1y6vA	449	78.46	c.76.1.1	122674
2ptzA	432	82.02		
3pmgA	561	82.97	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1ospO	257	83.23	b.76.1.1	27971
2oq2A	261	83.62		
1wuuA	399	84.98	d.14.1.5,d.58.26.7	114900,114901
1oneA	436	85.82	c.1.11.1,d.54.1.1	29200,38844
1kfcA	268	86.16	c.1.2.4	77371
3b42A	135	86.79		
2ppnA	107	87.30		
2b69A	343	89.11	c.2.1.2	127974