# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	9.272		
1auk	489	12.17		
1cozA	129	15.96	c.26.1.2	31598
1sb8A	352	19.31	c.2.1.2	105410
1ei6A	406	22.73	c.76.1.4	90443
2ovkC	159	23.01		
1p0zA	131	30.69	d.110.6.1	93882
1gy8A	397	37.43	c.2.1.2	83376
1gp8A	40	40.50	j.58.1.1	46342
1a7sA	225	42.17	b.47.1.2	26284
1q2hA	69	42.46	a.34.4.1	104498
3bu8A	235	44.76		
2gsoA	393	47.97		
3bqoA	211	49.03		
2a31A	223	49.18	b.47.1.2	126068
1p49A	562	54.49	c.76.1.2	94089
1um5L	219	56.20	b.1.1.1,b.1.1.2	113304,113305
2pzmA	330	56.25		
1t8oA	245	58.52	b.47.1.2	119187
2v0xA	235	62.20		
2pvqA	201	62.82		
2ptzA	432	63.00		
2ra3A	224	64.71		
1c9oA	66	65.01	b.40.4.5	25325
1fsuA	492	66.17	c.76.1.2	35032
2gp4A	628	67.38	c.8.2.2,d.334.1.1	135448,135449
2b69A	343	72.94	c.2.1.2	127974
1v04A	355	73.60	b.68.6.2	100240
2hh7A	119	74.31		
2hh8A	149	75.32		
1iauA	227	80.11	b.47.1.2	62124
1oneA	436	83.09	c.1.11.1,d.54.1.1	29200,38844