# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t8oA	245	0.6058	b.47.1.2	119187
1rz2A	254	1.788	b.100.1.1	105130
1dpoA	223	6.816	b.47.1.2	25975
2vugA	389	7.542		
2f9iB	285	7.760		
2z9iA	324	9.479		
3cncA	220	9.834		
2ra3A	224	12.86		
1u3dA	509	13.09	a.99.1.1,c.28.1.1	107638,107639
1ed8A	449	13.26	c.76.1.1	34988
2uwgA	171	13.69		
1eaxA	241	14.99	b.47.1.2	64889
2nutA	769	15.16		
2z07A	420	15.50		
2bvrH	252	16.47		
2gu9A	113	16.52		
2qneA	495	16.68		
1q2hA	69	18.85	a.34.4.1	104498
2pia	321	19.33		
2gakA	391	20.54		
2i5vO	251	21.11		
2nn6B	249	21.84		
2oi2A	292	22.13		
1w0dA	337	22.25	c.77.1.1	114060
1cozA	129	22.57	c.26.1.2	31598
1kmiZ	214	23.78	h.4.11.1	72752
2ds3A	761	25.41		
3bqoA	211	25.76		
1p32A	209	25.85	d.25.1.1	38379
2pbeA	294	26.37		
2pa7A	141	27.75		
1wdcC	156	27.85	a.39.1.5	17317
2rerA	173	28.25		
1qs0A	407	28.51	c.36.1.11	31829
2gsoA	393	29.84		
2qxiA	224	29.93		
2a31A	223	30.67	b.47.1.2	126068
2g8cO	251	31.73		
1sb8A	352	32.39	c.2.1.2	105410
2f2hA	773	34.32	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1wfxA	186	34.94	d.166.1.5	114596
1usyA	275	36.00	d.104.1.1	113422
1h9hE	223	36.49	b.47.1.2	103810
1vkmA	297	40.36	c.138.1.1	108670
1eq2A	310	40.80	c.2.1.2	29814
2gdrA	202	41.67		
2i9cA	123	42.94		
2j0wA	449	43.32	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2sakA	121	44.03	d.15.5.1	37711
1qwzA	235	44.87	b.100.1.1	96510
2rghA	571	45.13		
1knbA	196	48.12	b.21.1.1	23841
1uf3A	228	48.16	d.159.1.6	99317
1xtqA	177	48.41	c.37.1.8	122297
2oa2A	148	48.46		
1ozhA	566	48.97	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
1a3wA	500	49.05	b.58.1.1,c.1.12.1,c.49.1.1	27060,29288,33142
2i44A	324	51.75		
2r8cA	426	51.78		
2jobA	102	51.88		
2zivB	351	52.08		
1on3A	523	52.75	c.14.1.4,c.14.1.4	87107,87108
1edgA	380	52.94	c.1.8.3	28807
2pzmA	330	54.50		
2ebdA	309	54.54		
2v3uA	265	55.45		
2z4uA	261	55.65		
1sw2A	275	56.34	c.94.1.1	106064
1aosA	464	56.82	a.127.1.1	19414
2ovkC	159	57.11		
2z1mA	345	58.38		
1j1nA	492	59.53	c.94.1.1	83978
2sak	121	59.62		
1n8fA	350	61.24	c.1.10.4	85397
3c0iA	351	63.77		
2p3uB	233	64.04		
1nnfA	309	65.64	c.94.1.1	85903
3buuA	229	66.44		
2qwwA	154	67.23		
3bu8A	235	67.84		
1me8A	503	68.26	c.1.5.1	79028
2ntoA	201	68.57		
1lv7A	257	70.40	c.37.1.20	78232
2gq0A	303	70.78		
1zunB	434	71.64	b.43.3.1,b.44.1.1,c.37.1.8	125677,125678,125679
2h0rA	216	72.51		
1musA	477	72.76	c.55.3.4	79494
1gq6A	313	72.81	c.42.1.1	70341
2cf8H	257	73.15		
1h4wA	224	73.98	b.47.1.2	65622
1yphC	131	74.12		
1ceo	343	76.80		
2yzsA	315	78.29		
2d4wA	504	79.24		
2f3yA	148	81.26		
1xdwA	331	82.24		
2c4xA	260	83.01		
1zgdA	312	83.78		
2f91A	237	84.39	b.47.1.2	133150
1l8nA	679	84.85	c.1.8.10,d.92.2.2	84564,84565
1qhtA	775	86.57	c.55.3.5,e.8.1.1	33722,43011
1y1xA	191	86.94	a.39.1.8	116374
2p10A	286	87.24		
2ixtA	310	87.88		
2pgbB	259	88.20		
2r11A	306	89.26		
2i1sA	188	89.69