# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ei6A	406	18.78	c.76.1.4	90443
1auk	489	21.08		
1sb8A	352	24.16	c.2.1.2	105410
2i9cA	123	34.26		
3bqoA	211	36.94		
1a7sA	225	37.39	b.47.1.2	26284
2gsoA	393	42.79		
2i2wA	212	52.47		
1p0zA	131	52.72	d.110.6.1	93882
2ptzA	432	52.82		
2f9iB	285	56.66		
1q2hA	69	61.37	a.34.4.1	104498
1cozA	129	63.27	c.26.1.2	31598
1c9oA	66	64.32	b.40.4.5	25325
3bu8A	235	64.93		
1h6oA	204	67.38	a.146.1.1	60689
1gp8A	40	71.08	j.58.1.1	46342
2ewfA	610	71.82		
2vccA	891	72.73		
2oa2A	148	76.63		
1oneA	436	78.22	c.1.11.1,d.54.1.1	29200,38844
1kjnA	157	78.52	c.115.1.1	72614
1t8oA	245	79.08	b.47.1.2	119187
2gu9A	113	80.68		
1tjlA	151	82.82	a.2.14.1,g.39.1.13	107027,107028
2v26A	784	86.75		
1xauA	122	88.96	b.1.1.4	115041