# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	6.660		
1sb8A	352	12.95	c.2.1.2	105410
1cozA	129	14.05	c.26.1.2	31598
1auk	489	15.54		
1p0zA	131	19.28	d.110.6.1	93882
1ei6A	406	19.29	c.76.1.4	90443
2gsoA	393	22.95		
1t8oA	245	35.32	b.47.1.2	119187
1yzyA	413	39.54	c.146.1.1	124292
1a7sA	225	39.87	b.47.1.2	26284
2i9cA	123	40.17		
3bqoA	211	42.19		
2hh8A	149	43.37		
1tjlA	151	44.07	a.2.14.1,g.39.1.13	107027,107028
1q2hA	69	45.65	a.34.4.1	104498
2z1uA	343	48.02		
1gp8A	40	48.21	j.58.1.1	46342
1p49A	562	50.57	c.76.1.2	94089
3bu8A	235	55.94		
1fsuA	492	57.99	c.76.1.2	35032
1qwzA	235	58.42	b.100.1.1	96510
2b69A	343	61.38	c.2.1.2	127974
2pvqA	201	61.81		
1c9oA	66	64.97	b.40.4.5	25325
2ovkC	159	65.23		
2hkjA	469	68.17	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
1kjnA	157	68.70	c.115.1.1	72614
2vccA	891	69.59		
2f7tA	227	75.88		
1a5tA	334	76.15	a.80.1.1,c.37.1.20	18450,32423
1zsqA	528	78.67	b.55.1.8,c.45.1.3	125616,125617
1yg2A	179	79.56	a.4.5.61	116681
1yqeA	282	80.82	c.56.7.1	123879
2v0xA	235	84.36		
1hlb	158	85.34		
2vugA	389	86.01		
1u8zA	168	86.82	c.37.1.8	113212
2d4wA	504	88.67