# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	5.428		
1auk	489	8.966		
1sb8A	352	14.72	c.2.1.2	105410
1cozA	129	15.15	c.26.1.2	31598
1ei6A	406	15.37	c.76.1.4	90443
1p0zA	131	21.58	d.110.6.1	93882
2gsoA	393	25.12		
1fsuA	492	30.76	c.76.1.2	35032
1a7sA	225	36.48	b.47.1.2	26284
2i9cA	123	37.70		
1p49A	562	40.38	c.76.1.2	94089
3bqoA	211	42.74		
1gp8A	40	51.02	j.58.1.1	46342
1oneA	436	51.31	c.1.11.1,d.54.1.1	29200,38844
1yzyA	413	52.66	c.146.1.1	124292
3bu8A	235	53.06		
2pt7G	152	57.29		
1q2hA	69	60.93	a.34.4.1	104498
1t8oA	245	61.13	b.47.1.2	119187
1h7zA	194	61.95	b.21.1.1	60733
2z1uA	343	63.21		
2qzuA	491	68.14		
2d4wA	504	68.42		
1tjlA	151	69.13	a.2.14.1,g.39.1.13	107027,107028
2hh8A	149	70.48		
1h6oA	204	73.10	a.146.1.1	60689
2vccA	891	73.94		
1qwzA	235	75.56	b.100.1.1	96510
3cncA	220	76.25		
2ra3A	224	79.67		
2b69A	343	79.80	c.2.1.2	127974
1kjnA	157	80.73	c.115.1.1	72614
1uf3A	228	85.46	d.159.1.6	99317
1c9oA	66	86.86	b.40.4.5	25325
2pvqA	201	89.44		
2i09A	403	89.96	c.76.1.5,d.327.1.1	136946,136947