# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	4.089		
2i24N	121	6.199		
2p35A	259	13.21		
1hlb	158	16.69		
1rz2A	254	19.90	b.100.1.1	105130
2a13A	166	24.62	b.60.1.8	125971
1sq2N	113	32.38	b.1.1.1	105881
1fc3A	120	33.38	a.4.6.3	16237
2o2kA	355	33.39		
2dgbA	84	33.98		
2f2hA	773	35.16	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1vq3A	94	48.10	d.284.1.1	114005
1qwzA	235	54.37	b.100.1.1	96510
1g3mA	294	55.29	c.37.1.5	83268
2i2wA	212	55.49		
2arcA	164	55.99	b.82.4.1	28148
2i9cA	123	59.13		
1gp8A	40	60.37	j.58.1.1	46342
1yg2A	179	64.35	a.4.5.61	116681
1p0zA	131	65.21	d.110.6.1	93882
1pa4A	116	65.94	d.52.7.1	94409
1r4xA	275	66.12	b.1.10.3,d.105.1.2	97054,97055
1dwkA	156	66.50	a.35.1.4,d.72.1.1	17075,39606
1nhyA	219	66.53	a.45.1.1,c.47.1.5	80520,80521
1w4tA	299	68.25	d.3.1.5	120639
3cg0A	140	70.12		
1w68A	390	71.85	a.25.1.2	109216
2pg4A	95	74.08		
2gu9A	113	75.77		
1g4yB	101	77.35	f.15.1.1	60251
1z56A	246	78.40		
1zzwA	149	79.65		
1yy7A	213	79.90		
1uok	558	82.02		
1surA	215	83.95	c.26.2.2	31620
1yzyA	413	85.55	c.146.1.1	124292
1ylnA	252	85.81	b.45.2.1,b.45.2.2	123657,123658
2nlwA	105	87.03		
1tjlA	151	87.76	a.2.14.1,g.39.1.13	107027,107028