# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f9iB	285	2.276		
2f2hA	773	14.32	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1gp8A	40	17.18	j.58.1.1	46342
1auk	489	27.29		
1ei6A	406	31.00	c.76.1.4	90443
2g3mA	693	38.85		
1edgA	380	40.79	c.1.8.3	28807
2gsoA	393	45.56		
2qzuA	491	47.67		
2jepA	395	47.86		
1v95A	130	51.90	c.51.1.1	108435
2i9cA	123	52.16		
2fyfA	398	52.77		
2o2kA	355	53.18		
3cg0A	140	53.54		
1bmtA	246	59.82	a.46.1.1,c.23.6.1	17757,31235
1yzyA	413	65.00	c.146.1.1	124292
2qypA	91	65.97		
1p3wA	404	68.35	c.67.1.3	87752
1p0zA	131	69.49	d.110.6.1	93882
1dgwA	178	76.08	b.82.1.2	28090
1cozA	129	78.91	c.26.1.2	31598
1oneA	436	79.02	c.1.11.1,d.54.1.1	29200,38844
1zyoA	191	79.52		
2dl6A	83	79.79		
2hy1A	280	81.32		
1rz2A	254	81.41	b.100.1.1	105130
1apyA	162	81.78	d.153.1.5	42004
2f7tA	227	85.14		
1josA	128	88.13	d.52.7.1	84191