# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v9dA	343	2.448		
1hl2A	297	3.525	c.1.10.1	83581
1o5kA	306	4.710	c.1.10.1	92504
1xkyA	301	5.665	c.1.10.1	122094
1qhlA	227	6.164	c.37.1.12	32382
2ehhA	294	10.22		
2f7tA	227	10.36		
2r8wA	332	12.34		
1f74A	293	12.56	c.1.10.1	29079
3d0cA	314	16.54		
2vc6A	292	16.92		
2nuwA	288	17.97		
2pthA	193	19.34	c.56.3.1	33793
2pth	193	19.89		
2r5rA	271	20.52		
2r6aC	143	22.13		
1w3iA	293	22.47	c.1.10.1	109152
2h5xA	196	23.61		
1exnA	290	26.54	a.60.7.1,c.120.1.2	18088,33358
1r45A	204	28.04	d.166.1.1	111683
2rdxA	379	31.00		
1zp4A	304	32.34		
3b4uA	294	33.52		
1sxjC	340	38.21	a.80.1.1,c.37.1.20	106085,106086
1i3cA	149	38.27	c.23.1.1	71112
2h29A	189	38.84		
1vykA	149	40.85		
2c8eE	211	41.48		
2vq2A	225	42.71		
2qeeA	437	44.98		
2r91A	286	45.08		
1sauA	115	45.53		
1k66A	149	46.68	c.23.1.1	90941
1jgsA	138	48.56	a.4.5.28	66683
2pbrA	195	50.02		
1sd4A	126	53.14	a.4.5.39	105428
3bbyA	215	55.04		
2fh5A	185	55.60	d.110.4.4	133477
2aa1B	146	57.17		
2qg7A	458	59.65		
1dnlA	199	60.10	b.45.1.1	25753
2p35A	259	60.31		
1aihA	170	61.28	d.163.1.1	42149
1f9aA	168	64.10	c.26.1.3	31602
1yioA	208	65.20	a.4.6.2,c.23.1.1	123326,123327
1khtA	192	65.36	c.37.1.1	84401
2rfgA	297	65.89		
2fbkA	181	66.65	a.4.5.28	133247
2db2A	119	66.93		
2z16A	165	67.37		
1ym3A	215	67.41		
1a01B	146	68.72	a.1.1.2	15448
2yv7A	260	68.80		
2rjoA	332	69.41		
1j5sA	463	70.07	c.1.9.8	71580
2r4vA	247	70.67		
2j8gA	339	72.64		
1vi9A	299	73.56	c.72.1.5	100750
2atsA	292	75.59	c.1.10.1	127306
1rd5A	262	76.02	c.1.2.4	111772
2ciaA	102	76.51		
1acfA	125	83.45	d.110.1.1	40882
1ty9A	222	85.36	b.45.1.1	112827
1noyA	388	85.51	c.55.3.5	33713
1zu0A	529	85.56		
1yumA	242	85.93		
2qg3A	208	85.95		
1vhnA	318	89.23	c.1.4.1	100693