# List of top-scoring protein chains for T0496.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1iyxA	432	13.94	c.1.11.1,d.54.1.1	83815,83816
3bd3A	112	16.60		
2gkiA	291	27.79		
1bfoA	214	33.34	b.1.1.1,b.1.1.2	20310,21302
1nn5A	215	36.50	c.37.1.1	85892
1nmyA	209	36.63	c.37.1.1	85883
43c9A	113	37.61	b.1.1.1	20386
1e98A	215	38.56	c.37.1.1	64804
2imnA	113	40.79	b.1.1.1	19856
1a3rL	220	40.94	b.1.1.1,b.1.1.2	19780,20890
2immA	114	41.36	b.1.1.1	19857
1a5fL	220	44.79	b.1.1.1,b.1.1.2	20302,21294
1gp8A	40	44.94	j.58.1.1	46342
2c1oA	254	48.19		
2c1pA	218	48.77		
1fn4A	211	49.58	b.1.1.1,b.1.1.2	59884,59885
1mvuA	114	50.36	b.1.1.1	91474
1ap2A	113	50.38	b.1.1.1	20182
1e9fA	217	50.59	c.37.1.1	64811
1kkhA	317	50.73	d.14.1.5,d.58.26.3	72645,72646
2bx5A	107	52.21		
2ap2A	115	52.96	b.1.1.1	20178
1fgvL	109	53.79	b.1.1.1	19852
1ncbL	214	57.55	b.1.1.1,b.1.1.2	19980,21036
1mhhA	220	57.78	b.1.1.1,b.1.1.2	79119,79120
1nlbL	220	57.78	b.1.1.1,b.1.1.2	80623,80624
3cirA	602	59.17		
1visA	324	60.06	d.14.1.5,d.58.26.3	100769,100770
2uziL	104	71.91		
1je0A	236	72.30	c.56.2.1	66581
2i9lA	219	74.45		
2b76A	602	74.64	a.7.3.1,c.3.1.4,d.168.1.1	128009,128010,128011
1kf6A	602	74.71	a.7.3.1,c.3.1.4,d.168.1.1	72394,72395,72396
3cncA	220	80.49		
2vh5L	104	81.38		
1i3gL	111	81.99	b.1.1.1	66019
3cx5K	107	84.02