# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p49A	562	8.717	c.76.1.2	94089
1zotA	358	10.67		
2i1mA	333	13.84		
3b5qA	482	16.24		
2i9cA	123	25.06		
1ryp2	233	26.13		
2hs5A	239	27.24		
1umuA	116	32.69	b.87.1.1	28382
3bu8A	235	34.39		
1gp8A	40	37.54	j.58.1.1	46342
1h6pA	203	37.82	a.146.1.1	60690
3bqoA	211	42.07		
1h6oA	204	42.13	a.146.1.1	60689
1lml	478	42.29		
1auk	489	45.65		
1egaA	301	45.88	c.37.1.8,d.52.3.1	32150,38836
2vccA	891	47.29		
1neuA	124	47.30	b.1.1.1	19704
2gsoA	393	51.52		
1yrtA	364	56.44		
1o17A	345	59.11	a.46.2.1,c.27.1.1	80765,80766
1p0zA	131	59.33	d.110.6.1	93882
2ewfA	610	62.74		
2iucA	375	62.78		
1ufmA	84	65.60	a.4.5.47	107816
2ptzA	432	65.74		
1xauA	122	68.61	b.1.1.4	115041
1pvmA	184	69.02	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
3bhyA	283	71.04		
1c9oA	66	74.71	b.40.4.5	25325
1wo8A	126	75.46	c.24.1.2	121110
2rfrA	155	76.34		
1mogA	67	80.75	d.230.2.1	85034
2o57A	297	82.30		
2f9iB	285	84.18		
1nvvS	481	84.47	a.117.1.1	86279
2af6A	258	87.31