# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ryp2	233	8.750		
1zotA	358	12.72		
1umuA	116	20.43	b.87.1.1	28382
1p49A	562	23.91	c.76.1.2	94089
1gp8A	40	30.95	j.58.1.1	46342
2i1mA	333	33.78		
3cewA	125	37.67		
2ptzA	432	38.89		
2d40A	354	42.26		
1egaA	301	43.80	c.37.1.8,d.52.3.1	32150,38836
2hs5A	239	45.80		
3bhyA	283	50.14		
1lml	478	50.75		
2f9iB	285	55.53		
2o57A	297	58.19		
2i9cA	123	59.93		
1c9oA	66	60.95	b.40.4.5	25325
1z6jT	211	61.22	b.1.2.1,b.1.2.1	124527,124528
3b5qA	482	61.68		
2r55A	231	63.72		
2cujA	108	66.37	a.4.1.18	130812
2z1uA	343	68.40		
3bu8A	235	73.28		
1w94A	156	74.08	c.51.1.2	120774
1p0zA	131	74.74	d.110.6.1	93882
1neuA	124	75.50	b.1.1.1	19704
1h6oA	204	75.63	a.146.1.1	60689
2vccA	891	82.12		
1yrtA	364	83.87		
1wo8A	126	86.48	c.24.1.2	121110
1o17A	345	87.74	a.46.2.1,c.27.1.1	80765,80766
1xauA	122	88.43	b.1.1.4	115041
1h6pA	203	88.92	a.146.1.1	60690