# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p49A	562	5.207	c.76.1.2	94089
1zotA	358	5.261		
2i1mA	333	7.292		
1ryp2	233	12.60		
1wo8A	126	13.08	c.24.1.2	121110
1neuA	124	13.51	b.1.1.1	19704
1rz2A	254	13.89	b.100.1.1	105130
2vccA	891	16.40		
3b5qA	482	16.58		
2iucA	375	20.80		
3cewA	125	21.96		
2hs5A	239	23.81		
1p0zA	131	24.10	d.110.6.1	93882
1zlqA	502	24.75	c.94.1.1	125253
1egaA	301	24.95	c.37.1.8,d.52.3.1	32150,38836
2i9cA	123	26.21		
2af6A	258	30.37		
3bhyA	283	32.34		
3bqoA	211	32.80		
2gsoA	393	33.86		
1auk	489	34.22		
1yrtA	364	35.14		
2uz8A	174	41.80		
1hlb	158	42.55		
1uouA	474	43.22	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1kjnA	157	43.37	c.115.1.1	72614
2gqpA	236	43.67	d.122.1.1	135513
1ufmA	84	44.37	a.4.5.47	107816
1kqzA	273	45.55	c.1.8.5	68844
1mogA	67	45.97	d.230.2.1	85034
1gp8A	40	46.35	j.58.1.1	46342
2f9iB	285	46.50		
1yqeA	282	47.08	c.56.7.1	123879
2oq2A	261	47.40		
1z6jT	211	47.67	b.1.2.1,b.1.2.1	124527,124528
1yphC	131	47.99		
1nv8A	284	48.73	c.66.1.30	86224
2i5vO	251	50.23		
1h6oA	204	50.73	a.146.1.1	60689
2g8cO	251	51.16		
1lvmA	229	51.64	b.47.1.3	78243
1o17A	345	51.87	a.46.2.1,c.27.1.1	80765,80766
2bkhA	814	51.89		
2o57A	297	53.19		
1h6pA	203	54.80	a.146.1.1	60690
2ptzA	432	56.09		
3bu8A	235	56.92		
2pi6A	361	59.63		
1ppjA	446	62.64	d.185.1.1,d.185.1.1	104252,104253
2v26A	784	65.65		
1b93A	152	66.57	c.24.1.2	31507
1wmwA	330	68.59		
1rxwA	336	69.38	a.60.7.1,c.120.1.2	98059,98060
2pn1A	331	70.15		
1jlwA	219	71.58	a.45.1.1,c.47.1.5	71741,71742
1bkdS	439	72.81	a.117.1.1	19111
1khdA	345	73.42	a.46.2.1,c.27.1.1	77400,77401
2ftwA	521	73.78	b.92.1.3,c.1.9.6	134083,134084
1zbmA	280	74.71	c.94.1.1	124858
2qupA	145	76.31		
2furA	209	77.53	b.45.1.1	134185
2z1uA	343	78.69		
1p4pA	145	79.90	b.76.1.1	94112
1rypB	250	82.69	d.153.1.4	41933
1brwA	433	85.41	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626