# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i1mA	333	7.092		
1p49A	562	8.070	c.76.1.2	94089
3b5qA	482	10.24		
1zotA	358	13.58		
1wo8A	126	18.95	c.24.1.2	121110
2hs5A	239	24.17		
1auk	489	32.14		
1c9oA	66	34.34	b.40.4.5	25325
2f9iB	285	34.52		
1ryp2	233	34.84		
1h6pA	203	38.96	a.146.1.1	60690
1egaA	301	40.42	c.37.1.8,d.52.3.1	32150,38836
1bkdS	439	44.49	a.117.1.1	19111
3bu8A	235	45.45		
1neuA	124	46.95	b.1.1.1	19704
1gvfA	286	48.29	c.1.10.2	70599
1p0zA	131	49.97	d.110.6.1	93882
3bhyA	283	52.63		
2hrdA	253	54.94		
3bqoA	211	55.68		
2gsoA	393	55.73		
1gp8A	40	58.41	j.58.1.1	46342
1mogA	67	59.01	d.230.2.1	85034
2hziA	277	61.25		
1o17A	345	63.46	a.46.2.1,c.27.1.1	80765,80766
1zwyA	185	63.48	c.51.4.3	125753
1wmwA	330	66.19		
2o57A	297	69.32		
2ptzA	432	72.02		
1ufmA	84	78.64	a.4.5.47	107816
1ibrB	462	78.84	a.118.1.1	19120
1nsjA	205	79.50	c.1.2.4	28560
1lml	478	80.22		
2ivsA	314	80.51		
1b93A	152	85.67	c.24.1.2	31507
2ewfA	610	87.21		
1umuA	116	88.03	b.87.1.1	28382
2vccA	891	88.96		
2cn5A	329	89.86