# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i1mA	333	7.851		
3b5qA	482	10.66		
1zotA	358	14.74		
1p49A	562	16.99	c.76.1.2	94089
2hs5A	239	19.91		
1wo8A	126	28.31	c.24.1.2	121110
1bkdS	439	35.27	a.117.1.1	19111
1h6pA	203	36.73	a.146.1.1	60690
1egaA	301	40.90	c.37.1.8,d.52.3.1	32150,38836
3bu8A	235	43.36		
1ryp2	233	45.29		
1gp8A	40	45.96	j.58.1.1	46342
1p0zA	131	46.96	d.110.6.1	93882
2hrdA	253	49.47		
1lufA	343	52.13	d.144.1.7	78223
1o17A	345	54.59	a.46.2.1,c.27.1.1	80765,80766
1ufmA	84	58.34	a.4.5.47	107816
3bhyA	283	58.81		
1zwyA	185	59.23	c.51.4.3	125753
3bqoA	211	59.31		
2ptzA	432	60.08		
2hziA	277	60.16		
1neuA	124	61.12	b.1.1.1	19704
1lml	478	70.78		
1mogA	67	71.45	d.230.2.1	85034
1yrtA	364	73.94		
1c9oA	66	76.86	b.40.4.5	25325
2o57A	297	77.23		
3b2tA	311	78.08		
1gvfA	286	78.22	c.1.10.2	70599
1k2pA	263	78.24	d.144.1.7	72012
2v0xA	235	79.43		
2pvfA	334	79.88		
1nvvS	481	84.21	a.117.1.1	86279
1wmwA	330	86.39		
2i9cA	123	88.16		
2ivsA	314	88.40		
2gsoA	393	89.37