# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2af6A	258	2.646		
2o2kA	355	14.15		
2q3mA	326	15.84	c.37.1.5	139795
1rz2A	254	16.55	b.100.1.1	105130
1egaA	301	17.50	c.37.1.8,d.52.3.1	32150,38836
1h6oA	204	17.54	a.146.1.1	60689
2ejnA	153	20.44	a.101.1.1,a.101.1.1	132279,132280
3bqoA	211	21.56		
2i1mA	333	27.11		
1zkrA	153	27.56	a.101.1.1,a.101.1.1	125209,125210
1uouA	474	30.50	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1rxwA	336	31.26	a.60.7.1,c.120.1.2	98059,98060
2j9iA	421	31.50		
1t35A	191	33.20	c.129.1.1	99108
2i9cA	123	34.51		
3cewA	125	35.18		
1c9oA	66	36.58	b.40.4.5	25325
1gcoA	261	37.22	c.2.1.2	29884
1qqeA	292	39.52	a.118.8.1	19210
1geeA	261	40.01	c.2.1.2	90509
2yutA	207	46.89		
1xk4A	93	47.32	a.39.1.2	122055
1mskA	331	48.08	d.173.1.1	42495
3b5qA	482	49.71		
1ibrB	462	53.17	a.118.1.1	19120
1p0zA	131	53.90	d.110.6.1	93882
2f9iB	285	62.04		
2b4jC	98	63.24	a.48.4.1	127835
1gp8A	40	64.28	j.58.1.1	46342
1brwA	433	65.11	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1n5uA	585	65.54	a.126.1.1,a.126.1.1,a.126.1.1	85339,85340,85341
2esbA	188	72.19		
1g71A	347	73.21	d.264.1.1	43268
1mr8A	93	73.23	a.39.1.2	17186
1bu8A	452	73.33	b.12.1.2,c.69.1.19	23647,34795
1wn0A	145	75.11	a.24.10.2	121070
1o17A	345	78.00	a.46.2.1,c.27.1.1	80765,80766
2tpt	440	78.70		
1nsjA	205	80.63	c.1.2.4	28560
1dkzA	219	82.10	a.8.4.1,b.130.1.1	90345,90346
1o26A	232	83.09	d.207.1.1	86566
1zbmA	280	83.97	c.94.1.1	124858
2gsqA	202	85.36	a.45.1.1,c.47.1.5	17715,33009
1owqA	361	86.97	c.1.8.5,d.26.3.1	104041,104042
1y8aA	332	88.43