# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p49A	562	9.006	c.76.1.2	94089
2i1mA	333	11.95		
1zotA	358	18.90		
2hs5A	239	22.31		
3b5qA	482	23.13		
1zlqA	502	27.54	c.94.1.1	125253
2i9cA	123	32.59		
1egaA	301	33.63	c.37.1.8,d.52.3.1	32150,38836
1c9oA	66	38.44	b.40.4.5	25325
1p0zA	131	39.61	d.110.6.1	93882
2vccA	891	40.74		
1kjnA	157	42.53	c.115.1.1	72614
2ptzA	432	50.27		
1neuA	124	50.41	b.1.1.1	19704
2ewfA	610	51.17		
3bqoA	211	53.91		
1ryp2	233	63.20		
1umuA	116	63.55	b.87.1.1	28382
1h6pA	203	63.99	a.146.1.1	60690
1auk	489	64.19		
1h6oA	204	66.30	a.146.1.1	60689
3bhyA	283	70.15		
2rfrA	155	70.15		
1kqzA	273	72.13	c.1.8.5	68844
2f9iB	285	72.32		
2iucA	375	73.34		
2gsoA	393	73.98		
1pvmA	184	74.09	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1wo8A	126	78.68	c.24.1.2	121110
1zwyA	185	86.37	c.51.4.3	125753
1bkdS	439	87.77	a.117.1.1	19111
2d40A	354	88.13