# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r3sA	335	2.882		
1o26A	232	5.676	d.207.1.1	86566
2vugA	389	6.845		
3b5qA	482	7.086		
2nutA	769	7.630		
1g0uG	252	9.98	d.153.1.4	41952
1ozhA	566	10.02	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
2oqzA	223	10.98	b.100.1.1	139255
2z1mA	345	12.15		
1aru	344	12.72		
1yphC	131	13.52		
3cncA	220	14.13		
2i7aA	174	16.73		
1dmtA	696	18.67	d.92.1.4	40296
1cjaA	342	19.24	d.144.1.3	41708
1wdcC	156	19.72	a.39.1.5	17317
2af6A	258	20.36		
1ryp2	233	22.07		
1aw2A	256	22.60	c.1.1.1	28523
2r5kA	424	23.82		
2hs5A	239	25.64		
1ej5A	107	25.67	a.68.1.1	18268
1a3wA	500	26.89	b.58.1.1,c.1.12.1,c.49.1.1	27060,29288,33142
1kmiZ	214	27.55	h.4.11.1	72752
2v3uA	265	30.16		
1hurA	180	30.33	c.37.1.8	32052
2oa2A	148	30.63		
2vccA	891	30.99		
1gweA	503	31.31	e.5.1.1	70667
1p32A	209	31.54	d.25.1.1	38379
2zivB	351	32.93		
1alyA	146	33.26	b.22.1.1	23856
1zd1A	284	33.89		
1juhA	350	34.27	b.82.1.5	71884
1zbmA	280	34.86	c.94.1.1	124858
2i1mA	333	35.56		
1pvmA	184	36.05	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
2i5vO	251	36.13		
2qneA	495	38.21		
3cbuA	214	40.08		
2qh8A	302	40.86		
1kqzA	273	41.56	c.1.8.5	68844
1bkdS	439	44.74	a.117.1.1	19111
2i9cA	123	45.41		
2gsoA	393	45.84		
2rerA	173	45.97		
3bqoA	211	47.34		
2nn6B	249	50.64		
2g8cO	251	50.65		
1cghA	224	52.27	b.47.1.2	26290
1bqyA	234	53.11	b.47.1.2	26332
1souA	194	53.92	c.124.1.6	105858
1zotA	358	54.02		
1h9hE	223	54.90	b.47.1.2	103810
2p10A	286	55.26		
2ds3A	761	56.49		
3ddjA	296	56.66		
5ptp	223	58.98		
1cl8A	276	59.09	c.52.1.1	33230
1wljA	189	59.30	c.55.3.5	114734
2e9xC	219	59.37		
2c0hA	353	60.42	c.1.8.3	129594
1oxwA	373	60.89	c.19.1.3	87539
1np8A	159	62.33	a.39.1.8	92022
1eaxA	241	62.91	b.47.1.2	64889
1ei1A	391	63.46	d.14.1.3,d.122.1.2	37570,41104
1knbA	196	64.66	b.21.1.1	23841
1c9oA	66	64.76	b.40.4.5	25325
2p3uB	233	65.19		
1rz2A	254	66.58	b.100.1.1	105130
3b34A	891	66.96		
1or0B	528	67.49		
1eq2A	310	67.72	c.2.1.2	29814
2o20A	332	68.51		
1neuA	124	68.90	b.1.1.1	19704
3pvaA	335	69.55	d.153.1.3	41854
2ga8A	359	69.73		
2ip1A	432	70.45		
2e4tA	519	71.55		
1p0kA	349	72.82	c.1.4.1	87648
2cvzA	289	73.64	a.100.1.1,c.2.1.6	130890,130891
1rcuA	195	73.85	c.129.1.1	97295
2gu9A	113	73.85		
1hbzA	498	74.20	e.5.1.1	60937
3bhyA	283	74.54		
2hoeA	380	75.24	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
1on3A	523	75.25	c.14.1.4,c.14.1.4	87107,87108
1zs7A	190	78.05	b.122.1.1,d.17.6.4	125593,125594
2p61A	162	78.24		
2j7nA	1022	81.09		
3c61A	314	82.51		
2jobA	102	82.71		
3bpkA	206	83.30		
1ndh	272	84.57		
1aszB	490	85.63	b.40.4.1,d.104.1.1	25241,40762
1orrA	347	85.71	c.2.1.2	93460
1jiwI	106	86.83	b.61.2.1	63078
1ile	821	87.24		
2d4rA	147	88.26	d.129.3.6	131256
1vkmA	297	88.35	c.138.1.1	108670
2sakA	121	88.42	d.15.5.1	37711
1sw2A	275	88.74	c.94.1.1	106064