# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i1mA	333	11.67		
1p49A	562	13.93	c.76.1.2	94089
1zotA	358	21.32		
3b5qA	482	27.16		
1c9oA	66	31.37	b.40.4.5	25325
2ptzA	432	31.94		
1egaA	301	39.44	c.37.1.8,d.52.3.1	32150,38836
2hs5A	239	42.54		
1lml	478	47.81		
1umuA	116	54.03	b.87.1.1	28382
2d40A	354	58.26		
1ryp2	233	60.21		
2i9cA	123	60.77		
1rz2A	254	67.83	b.100.1.1	105130
1gp8A	40	74.81	j.58.1.1	46342
2ewfA	610	75.34		
1kjnA	157	76.19	c.115.1.1	72614
2vccA	891	78.01		
1zlqA	502	79.88	c.94.1.1	125253
1neuA	124	80.83	b.1.1.1	19704
1wo8A	126	84.96	c.24.1.2	121110
3bhyA	283	86.02		
2gsoA	393	87.14		
2f9iB	285	88.42