# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zotA	358	3.576		
1p49A	562	10.24	c.76.1.2	94089
3b5qA	482	12.55		
2i1mA	333	13.95		
1c9oA	66	22.99	b.40.4.5	25325
2f9iB	285	27.43		
2hs5A	239	28.06		
1p0zA	131	28.40	d.110.6.1	93882
1wo8A	126	32.35	c.24.1.2	121110
2i9cA	123	32.85		
2gsoA	393	33.90		
1rz2A	254	34.44	b.100.1.1	105130
1gp8A	40	36.51	j.58.1.1	46342
1mogA	67	37.05	d.230.2.1	85034
1bkdS	439	40.26	a.117.1.1	19111
1ryp2	233	43.54		
1yrtA	364	44.02		
1nvvS	481	46.06	a.117.1.1	86279
1umuA	116	46.35	b.87.1.1	28382
2iucA	375	46.78		
2vccA	891	48.71		
1auk	489	50.35		
1z6jT	211	52.58	b.1.2.1,b.1.2.1	124527,124528
2hrdA	253	53.76		
2af6A	258	56.40		
1ppjA	446	57.96	d.185.1.1,d.185.1.1	104252,104253
3bu8A	235	58.06		
1hlb	158	60.54		
3cewA	125	62.62		
2v0xA	235	62.75		
3bqoA	211	64.63		
1kjnA	157	65.09	c.115.1.1	72614
1neuA	124	67.11	b.1.1.1	19704
1lml	478	67.89		
1pvmA	184	69.12	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
3bhyA	283	73.28		
2o57A	297	74.30		
1h6pA	203	77.55	a.146.1.1	60690
2ptzA	432	77.98		
1egaA	301	78.91	c.37.1.8,d.52.3.1	32150,38836
1uouA	474	81.39	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1o17A	345	86.08	a.46.2.1,c.27.1.1	80765,80766
1jlwA	219	88.37	a.45.1.1,c.47.1.5	71741,71742
2rfrA	155	89.93