# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zotA	358	5.955		
3b5qA	482	7.252		
1p49A	562	8.921	c.76.1.2	94089
2i1mA	333	13.55		
1zwyA	185	22.20	c.51.4.3	125753
1ryp2	233	25.76		
1wo8A	126	28.87	c.24.1.2	121110
1p0zA	131	29.02	d.110.6.1	93882
1umuA	116	31.52	b.87.1.1	28382
2o57A	297	33.54		
1auk	489	34.53		
1c9oA	66	34.59	b.40.4.5	25325
1rz2A	254	35.43	b.100.1.1	105130
2f9iB	285	35.54		
2iucA	375	37.37		
1lml	478	37.97		
2hs5A	239	38.43		
2i9cA	123	40.29		
1gp8A	40	42.31	j.58.1.1	46342
1egaA	301	42.72	c.37.1.8,d.52.3.1	32150,38836
1yrtA	364	46.20		
2vccA	891	46.81		
1mogA	67	46.83	d.230.2.1	85034
1neuA	124	49.84	b.1.1.1	19704
2gsoA	393	58.23		
3bqoA	211	62.58		
1nvvS	481	63.32	a.117.1.1	86279
2ptzA	432	64.55		
3bhyA	283	64.58		
1bkdS	439	65.12	a.117.1.1	19111
1kjnA	157	65.75	c.115.1.1	72614
1z6jT	211	66.36	b.1.2.1,b.1.2.1	124527,124528
1r59O	505	66.53	c.55.1.4,c.55.1.4	111697,111698
1h6oA	204	68.87	a.146.1.1	60689
2v0xA	235	70.10		
3bu8A	235	73.54		
2af6A	258	73.88		
1ufmA	84	75.36	a.4.5.47	107816
2cn5A	329	76.27		
3cncA	220	77.20		
1h6pA	203	77.57	a.146.1.1	60690
1pvmA	184	80.25	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
2i5vO	251	80.97		
2g8cO	251	85.01		
2furA	209	88.07	b.45.1.1	134185