# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zotA	358	4.266		
2daqA	110	10.89	b.34.9.2	131354
2i24N	121	13.83		
2o2kA	355	16.36		
2oap1	511	17.79		
1yrtA	364	17.94		
2af6A	258	18.28		
1hlb	158	19.02		
3cewA	125	23.41		
2j9iA	421	24.71		
1egaA	301	24.75	c.37.1.8,d.52.3.1	32150,38836
2d40A	354	25.06		
2bnxA	386	26.08	a.118.1.23	128861
1c9oA	66	34.33	b.40.4.5	25325
1y8aA	332	35.64		
1w5rA	278	38.64	d.3.1.5	120643
2dgbA	84	42.15		
1rpyA	114	42.76	d.93.1.1	97718
1uouA	474	43.05	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1owqA	361	44.32	c.1.8.5,d.26.3.1	104041,104042
1ls6A	295	47.89	c.37.1.5	91115
1waaA	93	49.24		
1zzwA	149	49.55		
1zd1A	284	52.35		
1fehA	574	52.81	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
1r4xA	275	53.55	b.1.10.3,d.105.1.2	97054,97055
2r0bA	154	54.81		
1g0uL	241	57.49	d.153.1.4	41894
1gpl	432	57.76		
1pa4A	116	59.48	d.52.7.1	94409
1hlbA	158	59.74	a.1.1.2	15625
2glzA	153	62.79	d.81.3.1	135348
2pg4A	95	64.71		
2esbA	188	66.87		
1o17A	345	66.89	a.46.2.1,c.27.1.1	80765,80766
1ax8	146	69.69		
2i9cA	123	73.15		
1gp8A	40	74.39	j.58.1.1	46342
2i1mA	333	75.10		
1oh0A	131	76.73	d.17.4.3	87004
1rz2A	254	76.73	b.100.1.1	105130
2gsqA	202	77.92	a.45.1.1,c.47.1.5	17715,33009
1qqeA	292	82.18	a.118.8.1	19210
2pt7G	152	82.72		
1lml	478	85.54		
2d2mB	142	88.71		
2j16A	182	89.62		
1z56A	246	89.91