# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b5qA	482	9.176		
1zbmA	280	15.06	c.94.1.1	124858
1zotA	358	17.77		
1owqA	361	21.40	c.1.8.5,d.26.3.1	104041,104042
1egaA	301	23.52	c.37.1.8,d.52.3.1	32150,38836
1edg	380	31.30		
1gp8A	40	31.34	j.58.1.1	46342
2r0bA	154	32.64		
1sz7A	200	39.70		
1lml	478	42.11		
2esbA	188	43.93		
1g0uL	241	46.93	d.153.1.4	41894
2af6A	258	53.70		
2daqA	110	56.76	b.34.9.2	131354
1zzwA	149	57.72		
1y8aA	332	58.06		
1neuA	124	61.60	b.1.1.1	19704
3cewA	125	65.01		
2i9cA	123	65.88		
1umuA	116	66.69	b.87.1.1	28382
1vjzA	341	70.59	c.1.8.3	100838
1ocvA	125	72.91	d.17.4.3	86810
2f9iB	285	74.34		
1josA	128	74.93	d.52.7.1	84191
2o2kA	355	75.68		
1c9oA	66	78.87	b.40.4.5	25325
1pvmA	184	79.67	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
2dgbA	84	82.02		
1bu8A	452	84.92	b.12.1.2,c.69.1.19	23647,34795
1hlb	158	89.21