# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o5kA	306	3.901	c.1.10.1	92504
2v9dA	343	5.007		
2r6aC	143	7.054		
1hl2A	297	8.874	c.1.10.1	83581
2yv7A	260	10.40		
2audA	257	11.51		
1qhlA	227	11.55	c.37.1.12	32382
1f74A	293	13.13	c.1.10.1	29079
3cbuA	214	13.51		
3bbyA	215	15.79		
1xkyA	301	16.10	c.1.10.1	122094
2f7tA	227	16.89		
1nal1	297	17.16		
2pth	193	20.44		
1exnA	290	21.35	a.60.7.1,c.120.1.2	18088,33358
2vc6A	292	21.50		
2r8wA	332	21.79		
2fh5A	185	24.80	d.110.4.4	133477
2pthA	193	25.42	c.56.3.1	33793
2r4vA	247	26.66		
2ehhA	294	28.44		
2a8eA	220	37.55	d.296.1.1	126397
2h29A	189	37.97		
2ovjA	201	39.16		
1g79A	218	39.64	b.45.1.1	25752
1qciA	262	39.80	d.165.1.1	42201
1t9mA	214	41.47	b.45.1.1	112364
1p3wA	404	42.56	c.67.1.3	87752
1f3vA	179	42.61	d.58.22.1	39382
1r45A	204	45.96	d.166.1.1	111683
3d0cA	314	46.83		
1sxjC	340	47.85	a.80.1.1,c.37.1.20	106085,106086
1sd4A	126	48.28	a.4.5.39	105428
1n5uA	585	53.73	a.126.1.1,a.126.1.1,a.126.1.1	85339,85340,85341
1ydnA	295	56.22		
1xgwA	176	57.62		
1zd0A	150	57.91	d.329.1.1	124927
1puoA	170	57.96	a.101.1.1,a.101.1.1	95134,95135
3b4uA	294	58.10		
2qg3A	208	59.62		
3bghA	236	59.76		
1unlD	208	59.87	a.74.1.1	113326
1xhvA	257	61.79	c.52.1.19	109597
2grrB	170	62.73		
2vqeB	256	63.33		
2z4uA	261	65.55		
1on2A	142	65.79	a.4.5.24,a.76.1.1	87103,87104
1k68A	140	66.60	c.23.1.1	90943
1gci	269	70.65		
1ty9A	222	77.72	b.45.1.1	112827
1d4xA	375	78.40	c.55.1.1,c.55.1.1	59107,59108
2bdeA	470	78.44	c.108.1.23	128335
2f1sA	186	78.70		
1k4mA	213	79.96	c.26.1.3	77258
1gciA	269	82.03	c.41.1.1	32503
2r11A	306	82.66		
1zp4A	304	84.44		
2atsA	292	86.15	c.1.10.1	127306
2q9rA	200	86.43		
1yu6A	275	87.14	c.41.1.1	124040
3bf2A	152	87.61		
2hpsA	186	88.50		
1pt6A	213	88.74	c.62.1.1	95091
1eyhA	144	89.18	a.118.9.1	19214
1i9gA	280	89.20	c.66.1.13	62090
1a9wE	146	89.48	a.1.1.2	15551
2nptA	106	89.96	d.15.2.2	138448