# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2363		
1y88A	199	2.259	a.60.4.3,c.52.1.30	116560,116561
1gefA	123	3.061	c.52.1.18	60465
1ob8A	135	3.972	c.52.1.18	111627
1hh1A	143	4.855	c.52.1.18	61036
2inbA	140	15.87		
1bdfA	235	23.51	d.74.3.1,d.181.1.1	39727,42602
2pjuA	225	35.76		
1r6lA	239	46.63	d.14.1.4,d.101.1.1	97153,97154
1qwoA	442	49.34	c.60.1.2	104620
2q5cA	196	51.80		
1vc4A	254	55.49	c.1.2.4	100557
1fxoA	293	62.43	c.68.1.6	34524
3b4tA	262	68.13		
2rk0A	136	72.41		
1vetA	124	72.43	d.110.7.1	108553
1hg7A	66	72.57	b.85.1.1	28280
1cxqA	162	81.57	c.55.3.2	33621
2a22A	215	84.22	d.159.1.7	126025
1y56B	382	86.72