# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.4127		
1y88A	199	2.564	a.60.4.3,c.52.1.30	116560,116561
1ob8A	135	4.410	c.52.1.18	111627
1gefA	123	4.832	c.52.1.18	60465
1hh1A	143	7.163	c.52.1.18	61036
2inbA	140	20.60		
1bdfA	235	29.07	d.74.3.1,d.181.1.1	39727,42602
2pjuA	225	31.40		
2nv0A	196	48.06	c.23.16.1	138625
1vetA	124	50.03	d.110.7.1	108553
1cxqA	162	52.90	c.55.3.2	33621
1fxoA	293	56.27	c.68.1.6	34524
1d02A	202	67.84	c.52.1.8	33313
2q5cA	196	70.95		
1bueA	265	72.04	e.3.1.1	42727
1ojqA	212	74.05	d.166.1.1	93146
1oroA	213	76.42	c.61.1.1	34093
1y56B	382	84.09		
1g6aA	271	85.12	e.3.1.1	42704
1hg7A	66	85.68	b.85.1.1	28280