# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.1633		
1y88A	199	0.7184	a.60.4.3,c.52.1.30	116560,116561
1ob8A	135	2.536	c.52.1.18	111627
1gefA	123	3.297	c.52.1.18	60465
1hh1A	143	4.244	c.52.1.18	61036
2inbA	140	8.152		
2pjuA	225	8.756		
2q5cA	196	14.84		
1oroA	213	20.46	c.61.1.1	34093
2rk0A	136	21.10		
1ojqA	212	22.26	d.166.1.1	93146
1ez4A	318	33.89	c.2.1.5,d.162.1.1	64917,64918
1r45A	204	33.94	d.166.1.1	111683
1xmxA	385	35.39	c.52.1.26	115568
1vc4A	254	38.66	c.1.2.4	100557
2okfA	140	41.19		
1vetA	124	44.17	d.110.7.1	108553
1hg7A	66	49.44	b.85.1.1	28280
1rm6B	324	51.49	d.87.2.1,d.145.1.3	111874,111875
1fxoA	293	55.30	c.68.1.6	34524
1tvmA	113	56.69		
2drhA	361	63.25		
2p4pA	86	63.62		
1ucsA	64	65.65	b.85.1.1	88466
2ghsA	326	67.32	b.68.6.1	135209
2psbA	320	69.14		
1lmzA	187	69.28	a.96.1.4	74037
3c0dA	119	72.23		
1vknA	351	73.54	c.2.1.3,d.81.1.1	108676,108677
1qb5D	99	75.54	b.40.2.1	88357
2rb9A	334	75.92		
2olnA	397	78.81		
1vp8A	201	79.16	c.49.1.2	113947
2nv0A	196	81.12	c.23.16.1	138625
1dosA	358	82.10	c.1.10.2	29175
2p13A	90	82.20		
2d7vA	162	84.83		
2p3hA	101	88.01		
1a53A	247	88.67	c.1.2.4	28564