# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.07495		
1y88A	199	0.3533	a.60.4.3,c.52.1.30	116560,116561
1ob8A	135	1.653	c.52.1.18	111627
1gefA	123	2.288	c.52.1.18	60465
2inbA	140	4.430		
1hh1A	143	4.621	c.52.1.18	61036
1xmxA	385	7.353	c.52.1.26	115568
2okfA	140	9.243		
2pjuA	225	9.344		
2jc5A	259	12.05		
1ofzA	312	12.59	b.68.8.1	86978
1dcsA	311	12.74	b.82.2.1	28124
1dcs	311	18.11		
2o55A	258	18.27		
2q5cA	196	18.66		
2nv0A	196	29.67	c.23.16.1	138625
2fokA	579	31.67	a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12	16131,16132,16133,33323
1vknA	351	33.50	c.2.1.3,d.81.1.1	108676,108677
1hfuA	503	37.74	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1avqA	228	37.85	c.52.1.13	33326
2h5gA	463	45.35		
1o20A	427	47.60	c.82.1.1	86556
1bdfA	235	50.30	d.74.3.1,d.181.1.1	39727,42602
1v10A	521	51.70	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1vc4A	254	56.65	c.1.2.4	100557
1fyxA	149	56.77	c.23.2.1	31128
2otnA	308	57.79		
1x75A	132	66.26		
2jc4A	256	69.72		
1ydyA	356	71.14	c.1.18.3	123006
1k4mA	213	72.77	c.26.1.3	77258
2deoA	230	80.11		
1qnrA	344	80.12	c.1.8.3	28834