# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.4503		
1y88A	199	2.900	a.60.4.3,c.52.1.30	116560,116561
1gefA	123	6.712	c.52.1.18	60465
1ob8A	135	8.570	c.52.1.18	111627
1hh1A	143	11.96	c.52.1.18	61036
2inbA	140	20.10		
2rk0A	136	28.49		
2q5cA	196	30.53		
2pjuA	225	35.20		
1hg7A	66	44.29	b.85.1.1	28280
1xmxA	385	45.25	c.52.1.26	115568
2d7vA	162	62.85		
1ucsA	64	62.91	b.85.1.1	88466
1bdfA	235	71.82	d.74.3.1,d.181.1.1	39727,42602
1vetA	124	74.32	d.110.7.1	108553
1fxoA	293	77.99	c.68.1.6	34524
1zpdA	568	80.05	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
1vknA	351	83.98	c.2.1.3,d.81.1.1	108676,108677
1lmzA	187	85.67	a.96.1.4	74037
1y56B	382	86.13		
1cxqA	162	89.08	c.55.3.2	33621