# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	1.531		
1xmxA	385	2.234	c.52.1.26	115568
1y88A	199	3.208	a.60.4.3,c.52.1.30	116560,116561
2jc5A	259	8.300		
2inbA	140	9.370		
1ofzA	312	11.39	b.68.8.1	86978
2okfA	140	13.73		
2bbaA	185	14.91		
1shwB	181	15.27	b.18.1.4	105563
2nv0A	196	17.48	c.23.16.1	138625
1d02A	202	27.69	c.52.1.8	33313
2o55A	258	28.95		
1vc4A	254	30.09	c.1.2.4	100557
1vetA	124	37.20	d.110.7.1	108553
1y56B	382	38.53		
1ob8A	135	40.01	c.52.1.18	111627
2hstA	143	40.94		
1r6lA	239	41.34	d.14.1.4,d.101.1.1	97153,97154
2piaA	321	42.17	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
2jc4A	256	49.26		
2g17A	337	53.81	c.2.1.3,d.81.1.1	134512,134513
1dxjA	242	54.28	d.2.1.1	36244
1bdfA	235	54.85	d.74.3.1,d.181.1.1	39727,42602
3c8xA	206	55.00		
1dcsA	311	55.67	b.82.2.1	28124
3b4tA	262	57.17		
1vknA	351	58.47	c.2.1.3,d.81.1.1	108676,108677
1yd6A	99	60.94		
2fokA	579	68.74	a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12	16131,16132,16133,33323
1dc1A	323	69.65	c.52.1.11	33321
1gefA	123	74.22	c.52.1.18	60465
1dcs	311	76.47		
2deoA	230	79.16		
1vg0A	650	85.44	c.3.1.3,d.16.1.6	108596,108597
1ox0A	430	86.34	c.95.1.1,c.95.1.1	87495,87496
1f89A	291	86.57	d.160.1.1	64988
2baa	243	89.39