# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rb9A	334	3.249		
1k0iA	394	5.013	c.3.1.2,d.16.1.2	67942,67943
1vm7A	311	5.079	c.72.1.1	108884
1f89A	291	7.720	d.160.1.1	64988
1y88A	199	8.148	a.60.4.3,c.52.1.30	116560,116561
2cb4A	291	8.749		
2e52A	300	11.56		
2ddmA	283	12.94		
1vyrA	364	13.39	c.1.4.1	108906
2inbA	140	13.60		
2r4qA	106	13.98		
2r48A	106	14.50		
3cu3A	172	14.91		
1i4nA	251	17.56	c.1.2.4	71114
1a4iA	301	17.58	c.2.1.7,c.58.1.2	30278,33926
1vkmA	297	19.97	c.138.1.1	108670
1meoA	209	22.72	c.65.1.1	79035
2ot9A	180	23.05		
1j24A	143	24.63	c.52.1.20	84008
1to3A	304	25.25	c.1.10.1	107161
3cpgA	282	26.61		
3cxjA	165	26.72		
2bs2A	660	27.20	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1gvfA	286	28.41	c.1.10.2	70599
2bs3A	656	29.45	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1u8vA	490	29.68	a.29.3.1,e.6.1.1	113196,113197
1xuuA	349	29.93	b.85.1.1,c.1.10.6	116067,116068
2fv7A	331	30.55	c.72.1.1	134197
1t0fA	276	31.62	a.4.5.27,c.52.1.16	112195,112196
1v8aA	265	34.64	c.72.1.2	100494
2rhsA	294	36.09		
2bpqA	373	37.29		
2fliA	220	37.63	c.1.2.2	133714
2vhhA	405	38.48		
2uxyA	341	40.74		
1vi2A	300	41.04	c.2.1.7,c.58.1.5	100726,100727
1l7dA	384	41.89	c.2.1.4,c.23.12.2	77774,77775
1nekA	588	43.47	a.7.3.1,c.3.1.4,d.168.1.1	80426,80427,80428
1bx4A	345	44.65	c.72.1.1	34935
2nwrA	267	45.33		
1xmpA	170	48.16	c.23.8.1	115521
2d29A	387	50.58	a.29.3.1,e.6.1.1	131157,131158
2okfA	140	56.69		
1rg9A	383	56.86	d.130.1.1,d.130.1.1,d.130.1.1	97427,97428,97429
1v95A	130	57.11	c.51.1.1	108435
1rkd	309	57.22		
1pe1A	267	58.60	c.1.10.4	94591
2pg0A	385	59.12		
2ywxA	157	59.17		
1rkdA	309	60.22	c.72.1.1	34928
2h88A	621	60.36		
3d0cA	314	62.49		
3cneA	175	63.15		
2audA	257	64.01		
1fjhA	257	65.22	c.2.1.2	29870
1cex	214	65.46		
2z1uA	343	66.94		
1ob8A	135	66.94	c.52.1.18	111627
1p2hA	571	67.43	a.138.1.3,c.3.1.4,d.168.1.1	93930,93931,93932
2abqA	306	67.50	c.72.1.1	126528
2c2xA	281	69.97		
2ab0A	205	70.23	c.23.16.2	126501
1qczA	169	70.25	c.23.8.1	31276
1xi3A	215	71.17	c.1.3.1	109601
1ivnA	190	72.15	c.23.10.5	83719
2zdrA	349	72.25		
2d13A	227	72.77	c.26.2.1	131121
1ub0A	258	72.96	c.72.1.2	88394
1ehiA	377	73.67	c.30.1.2,d.142.1.1	31716,41484
2nloA	302	74.38		
2ogeA	399	75.02		
2g3wA	182	76.22		
3ce9A	354	76.75		
3cu2A	237	77.79		
2dztA	248	78.88		
1w8gA	234	82.37		
1tz7A	505	84.22	c.1.8.1	119394
2c81A	418	85.40		
2q71A	356	85.44		
1zylA	328	87.03		
2q02A	272	88.48