# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2733		
1gefA	123	0.5731	c.52.1.18	60465
1ob8A	135	0.7115	c.52.1.18	111627
1hh1A	143	1.837	c.52.1.18	61036
1u20A	212	4.657	d.113.1.1	119463
1y88A	199	19.67	a.60.4.3,c.52.1.30	116560,116561
2arcA	164	20.32	b.82.4.1	28148
1xmxA	385	33.73	c.52.1.26	115568
2je6B	250	40.76		
2pjuA	225	43.33		
2inbA	140	46.09		
1dynA	125	48.67	b.55.1.1	26955
1ucsA	64	53.50	b.85.1.1	88466
1hg7A	66	55.20	b.85.1.1	28280
2jc5A	259	59.13		
1r6lA	239	64.12	d.14.1.4,d.101.1.1	97153,97154
3b4tA	262	75.78		
3cneA	175	84.87		
2q5cA	196	89.89