# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2333		
1gefA	123	0.2510	c.52.1.18	60465
1ob8A	135	0.4290	c.52.1.18	111627
1hh1A	143	1.797	c.52.1.18	61036
1y88A	199	5.879	a.60.4.3,c.52.1.30	116560,116561
1u20A	212	6.358	d.113.1.1	119463
1xmxA	385	14.79	c.52.1.26	115568
2je6B	250	29.21		
2arcA	164	29.97	b.82.4.1	28148
2inbA	140	40.66		
3b4tA	262	43.90		
1ojrA	274	43.92	c.74.1.1	93147
1ucsA	64	44.69	b.85.1.1	88466
1hg7A	66	47.33	b.85.1.1	28280
1r6lA	239	52.59	d.14.1.4,d.101.1.1	97153,97154
2jc5A	259	55.11		
2a40B	260	56.59	d.151.1.1	126139
1dynA	125	58.24	b.55.1.1	26955
2q49A	359	64.30	c.2.1.3,d.81.1.1	139831,139832
1sqwA	188	65.00	b.122.1.1,d.17.6.3	119033,119034
1ofzA	312	67.32	b.68.8.1	86978
3cneA	175	71.74		
2pjuA	225	78.99		
1jj2S	119	83.15	b.34.5.1	63104
1e1aA	314	85.16	b.68.6.1	59155
2a7mA	250	89.02