# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gefA 123 0.01706 c.52.1.18 60465 2eo0A 147 0.2433 1ob8A 135 0.3416 c.52.1.18 111627 2a40B 260 2.079 d.151.1.1 126139 2imqX 282 3.332 1y88A 199 5.459 a.60.4.3,c.52.1.30 116560,116561 1wyuA 438 5.607 c.67.1.7 121452 1u20A 212 6.115 d.113.1.1 119463 1vsgA 364 6.254 h.4.1.1 45782 2je6B 250 7.238 1g9mG 321 7.827 d.172.1.1 42492 1hh1A 143 8.007 c.52.1.18 61036 1zxiC 288 8.084 d.87.2.1,d.145.1.3 125776,125777 2cx4A 164 9.217 c.47.1.10 130973 1n62C 288 9.898 d.87.2.1,d.145.1.3 80094,80095 1fgkA 310 10.19 d.144.1.7 41693 1sqgA 429 10.45 a.79.1.3,c.66.1.38 105912,105913 2d80A 318 10.67 2e52A 300 11.72 2uwiA 142 12.71 1ojrA 274 13.19 c.74.1.1 93147 2gduA 504 14.45 b.71.1.1,c.1.8.1 135032,135033 3bmvA 683 15.46 2ze0A 555 15.86 1q98A 165 16.46 c.47.1.10 96253 2q49A 359 16.79 c.2.1.3,d.81.1.1 139831,139832 1orvA 728 16.89 b.70.3.1,c.69.1.24 87354,87355 2po1B 277 17.11 1r89A 437 18.31 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1qh4A 380 18.38 a.83.1.1,d.128.1.2 18462,41197 1h1nA 305 18.48 c.1.8.3 70855 2arcA 164 18.63 b.82.4.1 28148 1sqjA 789 19.69 b.69.13.1,b.69.13.1 105918,105919 2ob3A 330 22.22 2fbeA 201 22.49 b.29.1.22 133241 1bgpA 309 23.61 a.93.1.1 18690 2je6A 277 23.77 3bvrA 383 24.43 3c96A 415 25.41 2i5nH 258 26.77 b.41.1.1,f.23.10.1 137064,137065 2o0jA 385 27.93 3c25A 383 28.01 1m15A 357 28.19 a.83.1.1,d.128.1.2 78368,78369 2c92A 160 28.34 2jc5A 259 29.48 2exuA 200 30.23 2gf3A 389 31.78 c.3.1.2,d.16.1.3 135070,135071 1m3sA 186 32.81 c.80.1.3 78573 2rjoA 332 35.05 2inbA 140 35.14 1h4pA 408 35.38 c.1.8.3 90617 1a8dA 452 35.59 b.29.1.6,b.42.4.2 24262,25607 1r6lA 239 35.82 d.14.1.4,d.101.1.1 97153,97154 1sdwA 314 37.78 b.121.1.2,b.121.1.2 98810,98811 1pztA 286 40.48 c.68.1.2 95470 3bkhA 268 41.05 2fbdA 122 41.79 1dynA 125 42.33 b.55.1.1 26955 1ppjD 241 43.00 a.3.1.3,f.23.11.1 104258,104259 2essA 248 44.98 d.38.1.8,d.38.1.8 132346,132347 1z7bA 358 45.64 c.2.1.2 124599 1l9cA 389 45.80 c.3.1.2,d.16.1.3 77815,77816 1u6rA 380 46.12 a.83.1.1,d.128.1.2 119600,119601 1ct9A 553 46.72 c.26.2.1,d.153.1.1 31616,41834 2zctA 249 47.01 1dzfA 215 48.40 c.52.3.1,d.78.1.1 33344,39753 1zv9A 172 48.95 b.2.2.2 125700 1r6fA 310 49.94 e.46.1.1 97149 3c3pA 210 50.69 1pl8A 356 50.93 b.35.1.2,c.2.1.1 94878,94879 1to3A 304 50.93 c.1.10.1 107161 2blnA 305 51.86 b.46.1.1,c.65.1.1 128734,128735 1p2hA 571 51.94 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2dkaA 544 53.03 2nn6B 249 54.56 1orrA 347 56.61 c.2.1.2 93460 1rkbA 173 57.89 c.37.1.1 111854 1x84A 189 58.25 d.113.1.2 121795 1s1mA 545 59.58 c.23.16.1,c.37.1.10 105201,105202 1ucsA 64 60.07 b.85.1.1 88466 2pjuA 225 60.16 1qwiA 143 60.34 d.227.1.1 96474 1sznA 417 60.49 b.71.1.1,c.1.8.1 106162,106163 1vffA 423 60.67 c.1.8.4 120033 2qt3A 403 61.03 1mskA 331 61.25 d.173.1.1 42495 1yvkA 163 61.57 d.108.1.1 124101 2qm8A 337 63.29 2qe8A 343 64.32 1u8xX 472 64.75 c.2.1.5,d.162.1.2 107741,107742 2gtqA 867 65.67 1k2fA 190 66.72 b.8.1.2 68054 3silA 379 66.80 b.68.1.1 27542 1y42X 392 69.58 1hg7A 66 70.78 b.85.1.1 28280 2aehA 369 72.47 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1ajoA 214 72.96 b.29.1.2 24179 2ozpA 345 73.85 1kssA 571 73.88 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2i52A 121 74.03 d.316.1.1 137055 1jj2S 119 75.43 b.34.5.1 63104 1t5rA 284 75.64 f.6.1.1 106465 1mkiA 330 75.66 e.3.1.2 84994 1uh5A 329 77.24 c.2.1.2 107840 2aqmA 154 77.99 1j31A 262 79.18 d.160.1.2 90808 1gyvA 120 80.06 b.1.10.2 70790 2e9xC 219 80.62 1wkbA 810 81.21 1eqcA 394 81.62 c.1.8.3 28811 1ecfA 504 81.77 c.61.1.1,d.153.1.1 34053,41820 2v9lA 274 84.59 1vprA 374 85.26 b.60.1.7 120066 1wycA 392 85.76 2o5fA 171 87.14 1zd7A 159 87.37 1gycA 499 88.51 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2hyxA 352 88.57 2irpA 208 89.62