# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.2783	c.52.1.18	60465
2eo0A	147	0.3233		
1ob8A	135	0.4579	c.52.1.18	111627
1hh1A	143	1.786	c.52.1.18	61036
1y88A	199	7.883	a.60.4.3,c.52.1.30	116560,116561
1u20A	212	8.268	d.113.1.1	119463
1xmxA	385	18.81	c.52.1.26	115568
2je6B	250	26.10		
2arcA	164	27.83	b.82.4.1	28148
3b4tA	262	31.70		
2a40B	260	39.23	d.151.1.1	126139
1r6lA	239	39.54	d.14.1.4,d.101.1.1	97153,97154
1ucsA	64	40.77	b.85.1.1	88466
2inbA	140	40.89		
1hg7A	66	41.39	b.85.1.1	28280
1dynA	125	50.57	b.55.1.1	26955
2jc5A	259	53.56		
2pjuA	225	55.71		
1ojrA	274	71.00	c.74.1.1	93147
1sqwA	188	72.44	b.122.1.1,d.17.6.3	119033,119034
2nn6B	249	79.97		
2q49A	359	85.33	c.2.1.3,d.81.1.1	139831,139832
2q5cA	196	85.76