# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gefA 123 0.4882 c.52.1.18 60465 2eo0A 147 0.5286 1ob8A 135 0.6344 c.52.1.18 111627 1hh1A 143 2.563 c.52.1.18 61036 1u20A 212 5.437 d.113.1.1 119463 1xmxA 385 17.74 c.52.1.26 115568 2jg6A 186 26.65 1dynA 125 27.47 b.55.1.1 26955 2arcA 164 33.60 b.82.4.1 28148 2a40B 260 38.65 d.151.1.1 126139 2pjuA 225 39.63 1mskA 331 40.20 d.173.1.1 42495 2je6B 250 45.71 2inbA 140 46.32 2q5cA 196 46.65 2q49A 359 47.07 c.2.1.3,d.81.1.1 139831,139832 1y88A 199 55.47 a.60.4.3,c.52.1.30 116560,116561 1hg7A 66 64.19 b.85.1.1 28280 1ucsA 64 65.58 b.85.1.1 88466 1ecfA 504 73.28 c.61.1.1,d.153.1.1 34053,41820 1tyjA 170 74.52 b.2.2.2 119390 2jc5A 259 74.89 3b4tA 262 79.24 2nn6B 249 82.86 2i52A 121 83.27 d.316.1.1 137055 2bm3A 166 87.39 b.2.2.2 128762